miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 26652 0.66 0.686298
Target:  5'- cUGGGCGGccccgGCCGGCccacCUucGCGCCuGGGCg -3'
miRNA:   3'- -ACUCGUC-----UGGCCGca--GA--CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 27705 0.76 0.221951
Target:  5'- cGAGC--GCCGGCGggccgCccGCGCCGAGCu -3'
miRNA:   3'- aCUCGucUGGCCGCa----Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 27749 0.67 0.656326
Target:  5'- -cGGCGGuugCGGCGgggggCUGUGCgGGGCg -3'
miRNA:   3'- acUCGUCug-GCCGCa----GACGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 27844 0.67 0.646288
Target:  5'- aUGAGCGGAgaccCCGuGCGggcccugugggCcGCGCuCGAGCg -3'
miRNA:   3'- -ACUCGUCU----GGC-CGCa----------GaCGCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 27872 0.69 0.517384
Target:  5'- gGGGCgccgaGGACgCGGaCGUCgcggagUGCGCCGAGg -3'
miRNA:   3'- aCUCG-----UCUG-GCC-GCAG------ACGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 28306 0.66 0.714901
Target:  5'- -aAGCGGcCCcgcgagaGGCGg--GCGCCGGGCc -3'
miRNA:   3'- acUCGUCuGG-------CCGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 28418 0.67 0.676339
Target:  5'- cGGGCGcgcaACCGGCGcCcGCGCUG-GCu -3'
miRNA:   3'- aCUCGUc---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 28738 0.66 0.706075
Target:  5'- cGGGCAGcgucGCCGcGCG-CgugcGUGCCGAcGCg -3'
miRNA:   3'- aCUCGUC----UGGC-CGCaGa---CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 28895 0.67 0.636239
Target:  5'- aGAGCAcgcGGCCGcCGUUUGggaCGCCGuGCa -3'
miRNA:   3'- aCUCGU---CUGGCcGCAGAC---GCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 29017 0.66 0.725612
Target:  5'- -cGGCGGcAgCGGCGcCcGCGCCGcGCu -3'
miRNA:   3'- acUCGUC-UgGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 29072 0.68 0.586092
Target:  5'- cGcGCGGcGCCGGCGcccCUGCcGCCG-GCg -3'
miRNA:   3'- aCuCGUC-UGGCCGCa--GACG-CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 29122 0.74 0.274532
Target:  5'- cGAGCGGcugcgcgaGCUGGCGgaccgCUGCGCCGucGCc -3'
miRNA:   3'- aCUCGUC--------UGGCCGCa----GACGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 29357 0.68 0.576132
Target:  5'- cGcGCGGccCCGGCGgcgCUgcGCGCCGAGg -3'
miRNA:   3'- aCuCGUCu-GGCCGCa--GA--CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 29463 0.67 0.626186
Target:  5'- -cGGCGGcCCGcGCGUCggccuggGCGCUGGcGCg -3'
miRNA:   3'- acUCGUCuGGC-CGCAGa------CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 29571 0.74 0.280954
Target:  5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3'
miRNA:   3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 29829 0.69 0.536737
Target:  5'- cGAcGCAGGuCCGcaacGCGgaggCUGUGCUGGGCg -3'
miRNA:   3'- aCU-CGUCU-GGC----CGCa---GACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 30393 0.67 0.672346
Target:  5'- cGAGC--GCCGGCGgcccgaguggccgCcGCGCCGcGGCg -3'
miRNA:   3'- aCUCGucUGGCCGCa------------GaCGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 30454 0.67 0.656326
Target:  5'- cUGGGCA-ACCGGC---UGCuGCUGAGCg -3'
miRNA:   3'- -ACUCGUcUGGCCGcagACG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 30752 0.72 0.351749
Target:  5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3'
miRNA:   3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 30791 0.69 0.517384
Target:  5'- cGGGCGcggacGCCGccGCGUCUGCcGCCGcGGCa -3'
miRNA:   3'- aCUCGUc----UGGC--CGCAGACG-CGGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.