miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 30990 0.66 0.683314
Target:  5'- gGAGCAGcgaagcggcaccauGuCCGGCGUUgccgGCGCgCGcGCg -3'
miRNA:   3'- aCUCGUC--------------U-GGCCGCAGa---CGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31084 0.66 0.715878
Target:  5'- -cAGUAcGACgCGGCG-CUgGgGCCGGGCa -3'
miRNA:   3'- acUCGU-CUG-GCCGCaGA-CgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31161 0.72 0.367343
Target:  5'- --cGCGGG-CGGCGUCgacgccGCGCUGGGCg -3'
miRNA:   3'- acuCGUCUgGCCGCAGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31349 0.66 0.735268
Target:  5'- aGuGCGGcuucuacacgccGCCGGCGgagcGCGCCcuGAGCa -3'
miRNA:   3'- aCuCGUC------------UGGCCGCaga-CGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 31429 0.66 0.706075
Target:  5'- cGGGCGGcgGCCGGCGgCcGCGgCG-GCc -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGaCGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31471 0.7 0.488902
Target:  5'- aUGGGCG--UCGGUGUCUuucGCGCCG-GCg -3'
miRNA:   3'- -ACUCGUcuGGCCGCAGA---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31556 0.68 0.606102
Target:  5'- cGAcgAGGCCGGCGcCgccgGCGgCGGGCc -3'
miRNA:   3'- aCUcgUCUGGCCGCaGa---CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31687 0.72 0.383406
Target:  5'- aGGGCGG-CC-GUGUCUGCGCUGuacGGCg -3'
miRNA:   3'- aCUCGUCuGGcCGCAGACGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 31716 0.66 0.735268
Target:  5'- aGGcGCGGGCCGcGCG-CcGCuGCgGAGCg -3'
miRNA:   3'- aCU-CGUCUGGC-CGCaGaCG-CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31773 0.66 0.719781
Target:  5'- aGAcGCGGcGCUGGCGUCcGCcgccacguuccccgcGUCGGGCa -3'
miRNA:   3'- aCU-CGUC-UGGCCGCAGaCG---------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31862 0.7 0.452119
Target:  5'- cGGGCucGCCGGCGUugCUGCcgGCgGAGCc -3'
miRNA:   3'- aCUCGucUGGCCGCA--GACG--CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31948 0.7 0.488902
Target:  5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 32054 0.69 0.546507
Target:  5'- cGcGCGGGCuCGGCGgcccccgggCUcgggccccuggGCGCCGGGCg -3'
miRNA:   3'- aCuCGUCUG-GCCGCa--------GA-----------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 32214 0.67 0.646288
Target:  5'- cGGGCGGgGCCGGgGcgCgggGCGCCGgacccaggGGCg -3'
miRNA:   3'- aCUCGUC-UGGCCgCa-Ga--CGCGGC--------UCG- -5'
6361 3' -59.9 NC_001847.1 + 32257 0.67 0.646288
Target:  5'- cUGAcGCAGACgCGuGCGUggCUcGCGCCGuccGCg -3'
miRNA:   3'- -ACU-CGUCUG-GC-CGCA--GA-CGCGGCu--CG- -5'
6361 3' -59.9 NC_001847.1 + 32259 0.69 0.556333
Target:  5'- aGAGCGGGCCcgGGCccgCcGCGCCGAa- -3'
miRNA:   3'- aCUCGUCUGG--CCGca-GaCGCGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 32370 0.72 0.367343
Target:  5'- gGGGgGGcGCCGGCGUCgcggGCGUCGcGCc -3'
miRNA:   3'- aCUCgUC-UGGCCGCAGa---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 32565 0.68 0.596084
Target:  5'- cUGGGC-GACCuGGCGgacgccaagCUGCGCCuAGUc -3'
miRNA:   3'- -ACUCGuCUGG-CCGCa--------GACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 32693 0.67 0.626186
Target:  5'- cGAGCuGugCGGCGccgUCUcggcGCGCUucaugGAGCg -3'
miRNA:   3'- aCUCGuCugGCCGC---AGA----CGCGG-----CUCG- -5'
6361 3' -59.9 NC_001847.1 + 32801 0.66 0.725612
Target:  5'- gGGGCGGACgGcGCGUUggaGCCGGacGCg -3'
miRNA:   3'- aCUCGUCUGgC-CGCAGacgCGGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.