miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 118674 0.71 0.434302
Target:  5'- aGAGguGuCCGcGC-UCUGCGCCGcgGGCc -3'
miRNA:   3'- aCUCguCuGGC-CGcAGACGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 118673 0.68 0.596084
Target:  5'- -aGGCAGGgCGGgGgUUGgGCCGGGCc -3'
miRNA:   3'- acUCGUCUgGCCgCaGACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 118218 1.11 0.000744
Target:  5'- cUGAGCAGACCGGCGUCUGCGCCGAGCg -3'
miRNA:   3'- -ACUCGUCUGGCCGCAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 117838 0.68 0.616138
Target:  5'- aGAGCGGACCGGCccgaccUCUGacagaggacgaCGCCaccGGCg -3'
miRNA:   3'- aCUCGUCUGGCCGc-----AGAC-----------GCGGc--UCG- -5'
6361 3' -59.9 NC_001847.1 + 117578 0.77 0.187202
Target:  5'- gGGGCGcgcuGcCCGGCcaaaacGUCUGCGCCGGGCu -3'
miRNA:   3'- aCUCGU----CuGGCCG------CAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 116801 0.71 0.44316
Target:  5'- uUGGGC-GACC-GCGaCUGCGCCcGGCa -3'
miRNA:   3'- -ACUCGuCUGGcCGCaGACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 116768 0.71 0.399929
Target:  5'- gGGGCcuGCUGG-GUCUGCGCCGAc- -3'
miRNA:   3'- aCUCGucUGGCCgCAGACGCGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 116491 0.85 0.054304
Target:  5'- cGGGCGGGCaCGGCGUCgcgcuCGCCGAGCa -3'
miRNA:   3'- aCUCGUCUG-GCCGCAGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 115865 0.67 0.626186
Target:  5'- cGAG-GGACCGGagGUC-GCGCCGccGGCc -3'
miRNA:   3'- aCUCgUCUGGCCg-CAGaCGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 115051 0.69 0.52606
Target:  5'- gGGGCAGagcuccaGCUGGCG-CUcGCcCCGAGCg -3'
miRNA:   3'- aCUCGUC-------UGGCCGCaGA-CGcGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 114966 0.67 0.676339
Target:  5'- --cGCAuACCGGCGcgcccguugccUgaGCGCCGAGUc -3'
miRNA:   3'- acuCGUcUGGCCGC-----------AgaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 113930 0.66 0.686298
Target:  5'- -aAGCAGcgcgcggucgcGgCGGCGUCUccuacGcCGCCGGGCg -3'
miRNA:   3'- acUCGUC-----------UgGCCGCAGA-----C-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 113411 0.69 0.546507
Target:  5'- cGcGCGGGCCGGCGcCggcccGCGCCcuGCu -3'
miRNA:   3'- aCuCGUCUGGCCGCaGa----CGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 113353 0.68 0.576132
Target:  5'- cGGGCccggGGACCcGCGcCcggccgGCGCCGGGCc -3'
miRNA:   3'- aCUCG----UCUGGcCGCaGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 113173 0.68 0.616138
Target:  5'- cGGGCGGcaACCGGCG-CcGCGgCCcAGCg -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGaCGC-GGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 112978 0.87 0.03638
Target:  5'- cGAGCAGGCCGGCccgCUGCGCCG-GCu -3'
miRNA:   3'- aCUCGUCUGGCCGca-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 112869 0.67 0.656326
Target:  5'- -cGGCcGACaCGcGCGcgCUGCGCCGcGCg -3'
miRNA:   3'- acUCGuCUG-GC-CGCa-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 111813 0.67 0.655323
Target:  5'- -uAGCGGACgacgccaaggacgUGGCGcggcUCagcgGCGCCGAGCu -3'
miRNA:   3'- acUCGUCUG-------------GCCGC----AGa---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111802 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111413 0.67 0.646288
Target:  5'- cGAGUAcGACCaagaGCGccugaucgaccUCUGCGCCGAccGCg -3'
miRNA:   3'- aCUCGU-CUGGc---CGC-----------AGACGCGGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.