miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 111338 0.72 0.367343
Target:  5'- cGAGCAGuggUCGGUGgccgCcGCGCUGGGCg -3'
miRNA:   3'- aCUCGUCu--GGCCGCa---GaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111259 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 110181 0.69 0.536737
Target:  5'- cGAGCGcccGACgGGCaUCUGCGUguaccuCGAGCc -3'
miRNA:   3'- aCUCGU---CUGgCCGcAGACGCG------GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 109213 0.67 0.635233
Target:  5'- cGGGCAGaccaagcGCCGGCGg--GuCGgCGGGCg -3'
miRNA:   3'- aCUCGUC-------UGGCCGCagaC-GCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 108733 0.66 0.735268
Target:  5'- cUGGGCGacugcGACgcgaCGGCGUUccugccGCGCUGGGCg -3'
miRNA:   3'- -ACUCGU-----CUG----GCCGCAGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 108036 0.66 0.706075
Target:  5'- -cGGCGG-CCGGCGgg-GCGCgCGcGGCa -3'
miRNA:   3'- acUCGUCuGGCCGCagaCGCG-GC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 107987 0.67 0.636239
Target:  5'- uUGGGCuGGCCGccGCGgCUGCGCCccccggacGGCa -3'
miRNA:   3'- -ACUCGuCUGGC--CGCaGACGCGGc-------UCG- -5'
6361 3' -59.9 NC_001847.1 + 107489 0.68 0.606102
Target:  5'- cGAGCAgGGCCGG-GUCUuCcuCCGAGCc -3'
miRNA:   3'- aCUCGU-CUGGCCgCAGAcGc-GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 107443 0.69 0.536737
Target:  5'- cGGGCGGcccGCCGGCGcUCgcGCGCCucAGCc -3'
miRNA:   3'- aCUCGUC---UGGCCGC-AGa-CGCGGc-UCG- -5'
6361 3' -59.9 NC_001847.1 + 106805 0.67 0.636239
Target:  5'- cGGGCGcgcGGCCccGCGgg-GCGCCGGGCc -3'
miRNA:   3'- aCUCGU---CUGGc-CGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 106797 0.66 0.735268
Target:  5'- cGGGCGGAUgaCGGCcgcgCUGCccGCCG-GCg -3'
miRNA:   3'- aCUCGUCUG--GCCGca--GACG--CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 106770 0.67 0.646288
Target:  5'- gGGGCGccgucuCCGGCG-CgaggGCGCCGGGg -3'
miRNA:   3'- aCUCGUcu----GGCCGCaGa---CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 106626 0.66 0.715878
Target:  5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3'
miRNA:   3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 106570 0.67 0.643274
Target:  5'- gGGGCAGucccagaggcccucGCgGGUGUCgcccGCGCCGccgaAGCg -3'
miRNA:   3'- aCUCGUC--------------UGgCCGCAGa---CGCGGC----UCG- -5'
6361 3' -59.9 NC_001847.1 + 106296 0.66 0.725612
Target:  5'- -uGGCGuccccGACCGGCGgcagCgGCGCCGucacGCu -3'
miRNA:   3'- acUCGU-----CUGGCCGCa---GaCGCGGCu---CG- -5'
6361 3' -59.9 NC_001847.1 + 106162 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 106060 0.66 0.696212
Target:  5'- cGuGCucGCCGGCGgcagggGCGCCG-GCg -3'
miRNA:   3'- aCuCGucUGGCCGCaga---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 105960 0.68 0.586092
Target:  5'- -cGGCGGcGCCGGCGgc-GCGgCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCGCagaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 105849 0.68 0.610114
Target:  5'- cGAGCAGcUCGGCGgcccggagcacgcgcUCcgggUGCGCCGccAGCg -3'
miRNA:   3'- aCUCGUCuGGCCGC---------------AG----ACGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 105692 0.66 0.706075
Target:  5'- cGcGCGGGCCGccGCGcCgcGCGUCGAGUa -3'
miRNA:   3'- aCuCGUCUGGC--CGCaGa-CGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.