miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 105574 0.67 0.676339
Target:  5'- -cGGCGGcGCCGGCGcCgGCGCCcccgccGGCg -3'
miRNA:   3'- acUCGUC-UGGCCGCaGaCGCGGc-----UCG- -5'
6361 3' -59.9 NC_001847.1 + 105325 0.74 0.294154
Target:  5'- --uGCGGACCuGCGUCgucguggGCGCCGGGg -3'
miRNA:   3'- acuCGUCUGGcCGCAGa------CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 105144 0.69 0.536737
Target:  5'- cGGGCGGGCagCGGCGgcucccgCcGCGCCG-GCc -3'
miRNA:   3'- aCUCGUCUG--GCCGCa------GaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 105030 0.7 0.488902
Target:  5'- -cAGUAGGCCGccaGCGcCgcgGCGCUGGGCg -3'
miRNA:   3'- acUCGUCUGGC---CGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104922 0.67 0.640259
Target:  5'- -cGGCGGGCCGcgaucucggccaGCGcCUcggggucgaaggcgaGCGCCGGGCg -3'
miRNA:   3'- acUCGUCUGGC------------CGCaGA---------------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104759 0.71 0.44316
Target:  5'- cGGGCc-GCCGGCGcUCguccuCGCCGGGCg -3'
miRNA:   3'- aCUCGucUGGCCGC-AGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104738 0.71 0.425547
Target:  5'- cGAGCuuGCCGGCGgccaGCGCC-AGCg -3'
miRNA:   3'- aCUCGucUGGCCGCaga-CGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 104433 0.66 0.706075
Target:  5'- --cGC--GCgGGCGUCcaggaGCGCCGGGCu -3'
miRNA:   3'- acuCGucUGgCCGCAGa----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104415 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 104351 0.7 0.470327
Target:  5'- -cGGCAGACgcggCGGCGUCcGCGCCc-GCa -3'
miRNA:   3'- acUCGUCUG----GCCGCAGaCGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 104110 0.68 0.596084
Target:  5'- cGAcGUcGGCCGGCGUUgccgGCGCgCGcGCg -3'
miRNA:   3'- aCU-CGuCUGGCCGCAGa---CGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 103956 0.69 0.527027
Target:  5'- aGAGCAccgucgaUGGCGUCgGCGCCcAGCg -3'
miRNA:   3'- aCUCGUcug----GCCGCAGaCGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 103572 0.67 0.656326
Target:  5'- aGGGCgAGGCCGGCccgccgccggCgGCGCCG-GCc -3'
miRNA:   3'- aCUCG-UCUGGCCGca--------GaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 103373 0.66 0.696212
Target:  5'- -cGGCGGACgccagCGccGCGUCUccgGCGCCGGGUc -3'
miRNA:   3'- acUCGUCUG-----GC--CGCAGA---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 103238 0.69 0.527027
Target:  5'- gGGGCGGGCgGGCGgcgGCGgCG-GCg -3'
miRNA:   3'- aCUCGUCUGgCCGCagaCGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 103005 0.68 0.606102
Target:  5'- gUGcGCGGGCgCGGCGgcgCccaGCGCCG-GCg -3'
miRNA:   3'- -ACuCGUCUG-GCCGCa--Ga--CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 102870 0.66 0.715878
Target:  5'- gGGGCGGAaauuUCGGCG-CgGCGggcCCGGGCc -3'
miRNA:   3'- aCUCGUCU----GGCCGCaGaCGC---GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 102685 0.75 0.238455
Target:  5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 102514 0.68 0.586092
Target:  5'- aGGGCAGAgCGcGCG-CcGCGCCG-GUg -3'
miRNA:   3'- aCUCGUCUgGC-CGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 102474 0.7 0.470327
Target:  5'- cGAGCGGGCCcGCGcCgccgGCGCCGucCa -3'
miRNA:   3'- aCUCGUCUGGcCGCaGa---CGCGGCucG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.