miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 83586 0.71 0.434302
Target:  5'- --cGCGGaagcGCUGGCGagCUGCGCCGAcGCc -3'
miRNA:   3'- acuCGUC----UGGCCGCa-GACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 116801 0.71 0.44316
Target:  5'- uUGGGC-GACC-GCGaCUGCGCCcGGCa -3'
miRNA:   3'- -ACUCGuCUGGcCGCaGACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 34262 0.76 0.216669
Target:  5'- aGGcGCAGACCGGCGcgCgGCGgCUGGGCg -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-GaCGC-GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 102685 0.75 0.238455
Target:  5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 132384 0.74 0.280954
Target:  5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3'
miRNA:   3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 9655 0.74 0.300933
Target:  5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3'
miRNA:   3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 133565 0.72 0.351749
Target:  5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3'
miRNA:   3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 111259 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 15767 0.72 0.391611
Target:  5'- cGGGCGGcccgcuuucGCCGGCGgcaaGCGCCGcGCg -3'
miRNA:   3'- aCUCGUC---------UGGCCGCaga-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 125766 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 130685 0.69 0.517384
Target:  5'- gGGGCgccgaGGACgCGGaCGUCgcggagUGCGCCGAGg -3'
miRNA:   3'- aCUCG-----UCUG-GCC-GCAG------ACGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 9508 0.69 0.514505
Target:  5'- cGAGCGGACCcgagccgagcgggcGGCGcgCUaGCGuCCGuGCg -3'
miRNA:   3'- aCUCGUCUGG--------------CCGCa-GA-CGC-GGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31862 0.7 0.452119
Target:  5'- cGGGCucGCCGGCGUugCUGCcgGCgGAGCc -3'
miRNA:   3'- aCUCGucUGGCCGCA--GACG--CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104415 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 47563 0.7 0.470327
Target:  5'- cGGGgAGcCCGGCGgccgCgcacGCGCCGAGg -3'
miRNA:   3'- aCUCgUCuGGCCGCa---Ga---CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 5611 0.7 0.470327
Target:  5'- -cGGUAGACgGGCGUggGCGCCGcGGUc -3'
miRNA:   3'- acUCGUCUGgCCGCAgaCGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 111802 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 43436 0.7 0.47957
Target:  5'- --uGCuGGCCGGCGUCgcgacccgggGCgacggcgcggucGCCGAGCg -3'
miRNA:   3'- acuCGuCUGGCCGCAGa---------CG------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134761 0.7 0.488902
Target:  5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 128803 0.69 0.507813
Target:  5'- aGGGCGGGCgGGCGg--GCGCgCaGGCg -3'
miRNA:   3'- aCUCGUCUGgCCGCagaCGCG-GcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.