Results 81 - 100 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 3' | -59.9 | NC_001847.1 | + | 1918 | 0.7 | 0.460265 |
Target: 5'- gGGGCAGguggcgaggcuuaGCCGGCGcgCgGCGCaGAGCu -3' miRNA: 3'- aCUCGUC-------------UGGCCGCa-GaCGCGgCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 106162 | 0.7 | 0.461175 |
Target: 5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3' miRNA: 3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 53010 | 0.7 | 0.470327 |
Target: 5'- gGAGCcGACagCGGCGgccgCUGCGCgcuCGGGCc -3' miRNA: 3'- aCUCGuCUG--GCCGCa---GACGCG---GCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 125854 | 0.7 | 0.47957 |
Target: 5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3' miRNA: 3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 34505 | 0.7 | 0.47957 |
Target: 5'- cGAGCgAGGCCGacGCGgacgGCGCCG-GCg -3' miRNA: 3'- aCUCG-UCUGGC--CGCaga-CGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 134761 | 0.7 | 0.488902 |
Target: 5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3' miRNA: 3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 128803 | 0.69 | 0.507813 |
Target: 5'- aGGGCGGGCgGGCGg--GCGCgCaGGCg -3' miRNA: 3'- aCUCGUCUGgCCGCagaCGCG-GcUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 125766 | 0.71 | 0.416899 |
Target: 5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3' miRNA: 3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 15767 | 0.72 | 0.391611 |
Target: 5'- cGGGCGGcccgcuuucGCCGGCGgcaaGCGCCGcGCg -3' miRNA: 3'- aCUCGUC---------UGGCCGCaga-CGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 111259 | 0.72 | 0.367343 |
Target: 5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3' miRNA: 3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 14416 | 0.69 | 0.536737 |
Target: 5'- cGAGCcucuGugCGGgGcUCcgcuguuugGCGCCGAGCg -3' miRNA: 3'- aCUCGu---CugGCCgC-AGa--------CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 85708 | 0.69 | 0.54357 |
Target: 5'- cUGAGCgAGccacaagcgccaguGCaCGGCGgcaggCUGCGCgGAGCc -3' miRNA: 3'- -ACUCG-UC--------------UG-GCCGCa----GACGCGgCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 134867 | 0.69 | 0.546507 |
Target: 5'- cGcGCGGGCuCGGCGgcccccgggCUcgggccccuggGCGCCGGGCg -3' miRNA: 3'- aCuCGUCUG-GCCGCa--------GA-----------CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 20263 | 0.69 | 0.556333 |
Target: 5'- aGAGCgAGA-CGGCGaggUCgGCGCCGcGCg -3' miRNA: 3'- aCUCG-UCUgGCCGC---AGaCGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 60128 | 0.68 | 0.566211 |
Target: 5'- gUGAGCgAGGg-GGCGUCgGCGCCGAagaacGCg -3' miRNA: 3'- -ACUCG-UCUggCCGCAGaCGCGGCU-----CG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 34262 | 0.76 | 0.216669 |
Target: 5'- aGGcGCAGACCGGCGcgCgGCGgCUGGGCg -3' miRNA: 3'- aCU-CGUCUGGCCGCa-GaCGC-GGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 102685 | 0.75 | 0.238455 |
Target: 5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3' miRNA: 3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 132384 | 0.74 | 0.280954 |
Target: 5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3' miRNA: 3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 9655 | 0.74 | 0.300933 |
Target: 5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3' miRNA: 3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 133565 | 0.72 | 0.351749 |
Target: 5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3' miRNA: 3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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