miRNA display CGI


Results 101 - 120 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 135072 0.69 0.556333
Target:  5'- aGAGCGGGCCcgGGCccgCcGCGCCGAa- -3'
miRNA:   3'- aCUCGUCUGG--CCGca-GaCGCGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 50243 0.68 0.566211
Target:  5'- -cGGCAGACgacgCGGCGaagCUggacGCGCUGGGCg -3'
miRNA:   3'- acUCGUCUG----GCCGCa--GA----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 10732 0.68 0.576132
Target:  5'- gGAGUAuguGGCCGGCGUacagGCGCauuuucuggcaGAGCu -3'
miRNA:   3'- aCUCGU---CUGGCCGCAga--CGCGg----------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 132170 0.68 0.576132
Target:  5'- cGcGCGGccCCGGCGgcgCUgcGCGCCGAGg -3'
miRNA:   3'- aCuCGUCu-GGCCGCa--GA--CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 18683 0.68 0.586092
Target:  5'- cUGAGCAGaACCGcgccGCGcgUGCGCC-AGCg -3'
miRNA:   3'- -ACUCGUC-UGGC----CGCagACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 125854 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53010 0.7 0.470327
Target:  5'- gGAGCcGACagCGGCGgccgCUGCGCgcuCGGGCc -3'
miRNA:   3'- aCUCGuCUG--GCCGCa---GACGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34262 0.76 0.216669
Target:  5'- aGGcGCAGACCGGCGcgCgGCGgCUGGGCg -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-GaCGC-GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 102685 0.75 0.238455
Target:  5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 132384 0.74 0.280954
Target:  5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3'
miRNA:   3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 9655 0.74 0.300933
Target:  5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3'
miRNA:   3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 133565 0.72 0.351749
Target:  5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3'
miRNA:   3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 111259 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 15767 0.72 0.391611
Target:  5'- cGGGCGGcccgcuuucGCCGGCGgcaaGCGCCGcGCg -3'
miRNA:   3'- aCUCGUC---------UGGCCGCaga-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 125766 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 19630 0.71 0.434302
Target:  5'- gGGGC--GCCGGCGUCgGCGCgCG-GCc -3'
miRNA:   3'- aCUCGucUGGCCGCAGaCGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 7297 0.71 0.434302
Target:  5'- cGAGCc-GCUGGCG-CgGCGCCuGAGCg -3'
miRNA:   3'- aCUCGucUGGCCGCaGaCGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 84107 0.7 0.452119
Target:  5'- aUGGGaCAGG-CGGCGUCgUGCaGCCGAuGCc -3'
miRNA:   3'- -ACUC-GUCUgGCCGCAG-ACG-CGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 1918 0.7 0.460265
Target:  5'- gGGGCAGguggcgaggcuuaGCCGGCGcgCgGCGCaGAGCu -3'
miRNA:   3'- aCUCGUC-------------UGGCCGCa-GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 106162 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.