miRNA display CGI


Results 121 - 140 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 18552 0.72 0.359487
Target:  5'- --cGCAGAgCGGCagcgCUGCGCCcaGAGCg -3'
miRNA:   3'- acuCGUCUgGCCGca--GACGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 26368 0.72 0.374514
Target:  5'- cGGGUGGGCCGcccggcaGCGUCcgGCGCCcAGCg -3'
miRNA:   3'- aCUCGUCUGGC-------CGCAGa-CGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 48171 0.68 0.576132
Target:  5'- -cGGCccGGCCGGCGgcguccugCUGUGCCGcGCc -3'
miRNA:   3'- acUCGu-CUGGCCGCa-------GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 59188 0.68 0.566211
Target:  5'- cGAGgGGGCCGucguagcccgaGcCGUCcGCGCCGuGCg -3'
miRNA:   3'- aCUCgUCUGGC-----------C-GCAGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 4225 0.69 0.556333
Target:  5'- cUGcGCGGuGCCGGCG-C-GCGCCG-GCa -3'
miRNA:   3'- -ACuCGUC-UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 70024 0.71 0.434302
Target:  5'- gUGaAGCGGAuuaaCCGGCG-CU-CGCUGAGCg -3'
miRNA:   3'- -AC-UCGUCU----GGCCGCaGAcGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104759 0.71 0.44316
Target:  5'- cGGGCc-GCCGGCGcUCguccuCGCCGGGCg -3'
miRNA:   3'- aCUCGucUGGCCGC-AGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31862 0.7 0.452119
Target:  5'- cGGGCucGCCGGCGUugCUGCcgGCgGAGCc -3'
miRNA:   3'- aCUCGucUGGCCGCA--GACG--CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 85498 0.7 0.461175
Target:  5'- gGAGaAGGCCgcuguggucGGCGUCUccaaaaacaGCGCCGGGUg -3'
miRNA:   3'- aCUCgUCUGG---------CCGCAGA---------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 47563 0.7 0.470327
Target:  5'- cGGGgAGcCCGGCGgccgCgcacGCGCCGAGg -3'
miRNA:   3'- aCUCgUCuGGCCGCa---Ga---CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 35502 0.7 0.470327
Target:  5'- cGcGCGGAggccaCGGCG-C-GCGCCGAGCg -3'
miRNA:   3'- aCuCGUCUg----GCCGCaGaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111802 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 59400 0.7 0.488902
Target:  5'- gGAGCcggcggAGGCgCGGCGgucaucgCUGCGCCccGGGCc -3'
miRNA:   3'- aCUCG------UCUG-GCCGCa------GACGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 134761 0.7 0.488902
Target:  5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 33965 0.69 0.507813
Target:  5'- cGAGCGcGCUGGCGccgggcgcgCUG-GCCGGGCu -3'
miRNA:   3'- aCUCGUcUGGCCGCa--------GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 9508 0.69 0.514505
Target:  5'- cGAGCGGACCcgagccgagcgggcGGCGcgCUaGCGuCCGuGCg -3'
miRNA:   3'- aCUCGUCUGG--------------CCGCa-GA-CGC-GGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 127939 0.69 0.536737
Target:  5'- aGAGCGGG-CGGCGgccgcggCUGCcuaaaGCCGaAGCg -3'
miRNA:   3'- aCUCGUCUgGCCGCa------GACG-----CGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 50076 0.69 0.536737
Target:  5'- cGGcGCGGACCcgGGCGcggccaaggCUgccGCGCCGGGCg -3'
miRNA:   3'- aCU-CGUCUGG--CCGCa--------GA---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 7209 0.69 0.546507
Target:  5'- cGAGCGcGGCUGGgcCGUCcaugGCGCUGcAGCg -3'
miRNA:   3'- aCUCGU-CUGGCC--GCAGa---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 124544 0.69 0.555349
Target:  5'- gGGcGCGGGCCGGCGccggcccgcgcgCgcgggggggccgccgGCGCCGGGCc -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-----------Ga--------------CGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.