Results 61 - 80 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 3' | -59.9 | NC_001847.1 | + | 44299 | 0.66 | 0.725612 |
Target: 5'- -cGGCGcGGCgCGGCGggcCaGCGCCaGAGCg -3' miRNA: 3'- acUCGU-CUG-GCCGCa--GaCGCGG-CUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 37022 | 0.66 | 0.725612 |
Target: 5'- cGuGCGGAgCGGg----GCGCCGGGCu -3' miRNA: 3'- aCuCGUCUgGCCgcagaCGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 57 | 0.66 | 0.715878 |
Target: 5'- gGGGCGGAaauuUCGGCG-CgGCGggcCCGGGCc -3' miRNA: 3'- aCUCGUCU----GGCCGCaGaCGC---GGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 75484 | 0.66 | 0.715878 |
Target: 5'- aGAGCGcACgGGCGg--GCG-CGAGCg -3' miRNA: 3'- aCUCGUcUGgCCGCagaCGCgGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 51539 | 0.66 | 0.715878 |
Target: 5'- gGGGCGGcGCCcaGGCGUCgGCGC--AGCu -3' miRNA: 3'- aCUCGUC-UGG--CCGCAGaCGCGgcUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 44072 | 0.66 | 0.715878 |
Target: 5'- cGuGCAGcugucgugccuGCugCGGCGUCUGCGCCc-GCc -3' miRNA: 3'- aCuCGUC-----------UG--GCCGCAGACGCGGcuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 22384 | 0.66 | 0.715878 |
Target: 5'- gGGGCAGAa-GGCGcccgggCcGCGgCGAGCg -3' miRNA: 3'- aCUCGUCUggCCGCa-----GaCGCgGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 98863 | 0.66 | 0.714901 |
Target: 5'- -cAGCAGAUCccggaagGGCGcgUGCGCCuGGGCg -3' miRNA: 3'- acUCGUCUGG-------CCGCagACGCGG-CUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 28306 | 0.66 | 0.714901 |
Target: 5'- -aAGCGGcCCcgcgagaGGCGg--GCGCCGGGCc -3' miRNA: 3'- acUCGUCuGG-------CCGCagaCGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 119179 | 0.66 | 0.714901 |
Target: 5'- gGGGCAGGCaugggaccgucgaUGGCGagcUCgucgGCGCCGcGGCc -3' miRNA: 3'- aCUCGUCUG-------------GCCGC---AGa---CGCGGC-UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 2984 | 0.66 | 0.715878 |
Target: 5'- --cGCcgGGGCCGGCG-CUGgaGCCGcGCg -3' miRNA: 3'- acuCG--UCUGGCCGCaGACg-CGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 42201 | 0.66 | 0.715878 |
Target: 5'- cGcAGCGGACCuccuGCGa-UGCGCCG-GCg -3' miRNA: 3'- aC-UCGUCUGGc---CGCagACGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 22090 | 0.66 | 0.725612 |
Target: 5'- -aAGCGGGCcCGGCaggcGCGCCGGGg -3' miRNA: 3'- acUCGUCUG-GCCGcagaCGCGGCUCg -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 118782 | 0.66 | 0.725612 |
Target: 5'- gUGAGCGGcACCGGCaGcCgccaGCGCCuccaGGCc -3' miRNA: 3'- -ACUCGUC-UGGCCG-CaGa---CGCGGc---UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 32801 | 0.66 | 0.725612 |
Target: 5'- gGGGCGGACgGcGCGUUggaGCCGGacGCg -3' miRNA: 3'- aCUCGUCUGgC-CGCAGacgCGGCU--CG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 3483 | 0.66 | 0.725612 |
Target: 5'- -uGGCGuccccGACCGGCGgcagCgGCGCCGucacGCu -3' miRNA: 3'- acUCGU-----CUGGCCGCa---GaCGCGGCu---CG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 31773 | 0.66 | 0.719781 |
Target: 5'- aGAcGCGGcGCUGGCGUCcGCcgccacguuccccgcGUCGGGCa -3' miRNA: 3'- aCU-CGUC-UGGCCGCAGaCG---------------CGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 3813 | 0.66 | 0.715878 |
Target: 5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3' miRNA: 3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 89324 | 0.66 | 0.715878 |
Target: 5'- cGAGUGGcCCgGGCGgcagCUccCGCCGGGCu -3' miRNA: 3'- aCUCGUCuGG-CCGCa---GAc-GCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 86639 | 0.66 | 0.715878 |
Target: 5'- gUGGGCGGGCC-GCGcCgccccggagcGCGCCGcGCu -3' miRNA: 3'- -ACUCGUCUGGcCGCaGa---------CGCGGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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