miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 118218 1.11 0.000744
Target:  5'- cUGAGCAGACCGGCGUCUGCGCCGAGCg -3'
miRNA:   3'- -ACUCGUCUGGCCGCAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 10165 0.87 0.03638
Target:  5'- cGAGCAGGCCGGCccgCUGCGCCG-GCu -3'
miRNA:   3'- aCUCGUCUGGCCGca-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 112978 0.87 0.03638
Target:  5'- cGAGCAGGCCGGCccgCUGCGCCG-GCu -3'
miRNA:   3'- aCUCGUCUGGCCGca-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 116491 0.85 0.054304
Target:  5'- cGGGCGGGCaCGGCGUCgcgcuCGCCGAGCa -3'
miRNA:   3'- aCUCGUCUG-GCCGCAGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 88237 0.81 0.094357
Target:  5'- gGAGCcgAGGCCGGCGcggCgcgggGCGCCGGGCg -3'
miRNA:   3'- aCUCG--UCUGGCCGCa--Ga----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 82072 0.8 0.110208
Target:  5'- cUGAGcCGGGCuCGGCGUCUGgGCCaAGCg -3'
miRNA:   3'- -ACUC-GUCUG-GCCGCAGACgCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 77451 0.77 0.173833
Target:  5'- cGAGCAG-UCGGCGggcuggggCggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCuGGCCGCa-------Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125516 0.77 0.182648
Target:  5'- -cGGCGGGCCGGCG-CgGCGgCGGGCg -3'
miRNA:   3'- acUCGUCUGGCCGCaGaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 117578 0.77 0.187202
Target:  5'- gGGGCGcgcuGcCCGGCcaaaacGUCUGCGCCGGGCu -3'
miRNA:   3'- aCUCGU----CuGGCCG------CAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34319 0.77 0.191855
Target:  5'- cGGGCGcGCUuGCGUCUGCGgCGAGCg -3'
miRNA:   3'- aCUCGUcUGGcCGCAGACGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 51059 0.77 0.191855
Target:  5'- cGAGCAGGCCaccgaGGCGUUcGUGCgCGGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAGaCGCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34262 0.76 0.216669
Target:  5'- aGGcGCAGACCGGCGcgCgGCGgCUGGGCg -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-GaCGC-GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 130518 0.76 0.221951
Target:  5'- cGAGC--GCCGGCGggccgCccGCGCCGAGCu -3'
miRNA:   3'- aCUCGucUGGCCGCa----Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 27705 0.76 0.221951
Target:  5'- cGAGC--GCCGGCGggccgCccGCGCCGAGCu -3'
miRNA:   3'- aCUCGucUGGCCGCa----Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 11308 0.75 0.232843
Target:  5'- aUGGGCgcgcccgccgAGGCCGGCGggcggCUgGCGCCgGAGCg -3'
miRNA:   3'- -ACUCG----------UCUGGCCGCa----GA-CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 102685 0.75 0.238455
Target:  5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 35917 0.75 0.24418
Target:  5'- cGAGCggcauGGACCGGCgGUCgcgcgcgcuUGCGCCuGGGCg -3'
miRNA:   3'- aCUCG-----UCUGGCCG-CAG---------ACGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 38116 0.75 0.262043
Target:  5'- --cGCuGcCCGGCGggUGCGCCGGGCa -3'
miRNA:   3'- acuCGuCuGGCCGCagACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 69305 0.74 0.274532
Target:  5'- cGGGCGGACCGGCugccuUUUGgGCgCGGGCc -3'
miRNA:   3'- aCUCGUCUGGCCGc----AGACgCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 29122 0.74 0.274532
Target:  5'- cGAGCGGcugcgcgaGCUGGCGgaccgCUGCGCCGucGCc -3'
miRNA:   3'- aCUCGUC--------UGGCCGCa----GACGCGGCu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.