Results 1 - 20 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 3' | -59.9 | NC_001847.1 | + | 112978 | 0.87 | 0.03638 |
Target: 5'- cGAGCAGGCCGGCccgCUGCGCCG-GCu -3' miRNA: 3'- aCUCGUCUGGCCGca-GACGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 36976 | 0.73 | 0.314851 |
Target: 5'- cGGGC--GCCGGCGagCgggcccGCGCCGAGCg -3' miRNA: 3'- aCUCGucUGGCCGCa-Ga-----CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 125737 | 0.72 | 0.351749 |
Target: 5'- gGGGUGGGCUGGCugggCUGgGCUGGGCu -3' miRNA: 3'- aCUCGUCUGGCCGca--GACgCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 41286 | 0.66 | 0.739107 |
Target: 5'- -cAGCAGcgcGCCGGCGUagugcgcgacguuucCgGCGCCGccGGCc -3' miRNA: 3'- acUCGUC---UGGCCGCA---------------GaCGCGGC--UCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 34319 | 0.77 | 0.191855 |
Target: 5'- cGGGCGcGCUuGCGUCUGCGgCGAGCg -3' miRNA: 3'- aCUCGUcUGGcCGCAGACGCgGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 34262 | 0.76 | 0.216669 |
Target: 5'- aGGcGCAGACCGGCGcgCgGCGgCUGGGCg -3' miRNA: 3'- aCU-CGUCUGGCCGCa-GaCGC-GGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 11308 | 0.75 | 0.232843 |
Target: 5'- aUGGGCgcgcccgccgAGGCCGGCGggcggCUgGCGCCgGAGCg -3' miRNA: 3'- -ACUCG----------UCUGGCCGCa----GA-CGCGG-CUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 102685 | 0.75 | 0.238455 |
Target: 5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3' miRNA: 3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 131935 | 0.74 | 0.274532 |
Target: 5'- cGAGCGGcugcgcgaGCUGGCGgaccgCUGCGCCGucGCc -3' miRNA: 3'- aCUCGUC--------UGGCCGCa----GACGCGGCu-CG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 33509 | 0.73 | 0.307832 |
Target: 5'- cGGGCGGcgGCgGGCGcCgccgcggagGCGCCGGGCg -3' miRNA: 3'- aCUCGUC--UGgCCGCaGa--------CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 25225 | 0.74 | 0.287494 |
Target: 5'- aGAGCAuGAUCGGCGUCgcgGgGacaaCGAGCu -3' miRNA: 3'- aCUCGU-CUGGCCGCAGa--CgCg---GCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 53709 | 0.74 | 0.274532 |
Target: 5'- cGAGUcuguGGGCCGGCGgCUgGCGCUGuGCg -3' miRNA: 3'- aCUCG----UCUGGCCGCaGA-CGCGGCuCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 77451 | 0.77 | 0.173833 |
Target: 5'- cGAGCAG-UCGGCGggcuggggCggGCGCCGGGCg -3' miRNA: 3'- aCUCGUCuGGCCGCa-------Ga-CGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 12971 | 0.74 | 0.292812 |
Target: 5'- aUGAGCAGGCCauGGCGcugcaguaccggcUggggguggggggcCUGUGCCGAGCa -3' miRNA: 3'- -ACUCGUCUGG--CCGC-------------A-------------GACGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 117578 | 0.77 | 0.187202 |
Target: 5'- gGGGCGcgcuGcCCGGCcaaaacGUCUGCGCCGGGCu -3' miRNA: 3'- aCUCGU----CuGGCCG------CAGACGCGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 69305 | 0.74 | 0.274532 |
Target: 5'- cGGGCGGACCGGCugccuUUUGgGCgCGGGCc -3' miRNA: 3'- aCUCGUCUGGCCGc----AGACgCG-GCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 9655 | 0.74 | 0.300933 |
Target: 5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3' miRNA: 3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 34623 | 0.73 | 0.32199 |
Target: 5'- cGAGgaAGuCCGGCGcCUGCgcgccgagGCCGAGCg -3' miRNA: 3'- aCUCg-UCuGGCCGCaGACG--------CGGCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 51059 | 0.77 | 0.191855 |
Target: 5'- cGAGCAGGCCaccgaGGCGUUcGUGCgCGGGCu -3' miRNA: 3'- aCUCGUCUGG-----CCGCAGaCGCG-GCUCG- -5' |
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6361 | 3' | -59.9 | NC_001847.1 | + | 130518 | 0.76 | 0.221951 |
Target: 5'- cGAGC--GCCGGCGggccgCccGCGCCGAGCu -3' miRNA: 3'- aCUCGucUGGCCGCa----Ga-CGCGGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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