miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 112978 0.87 0.03638
Target:  5'- cGAGCAGGCCGGCccgCUGCGCCG-GCu -3'
miRNA:   3'- aCUCGUCUGGCCGca-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 36976 0.73 0.314851
Target:  5'- cGGGC--GCCGGCGagCgggcccGCGCCGAGCg -3'
miRNA:   3'- aCUCGucUGGCCGCa-Ga-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125737 0.72 0.351749
Target:  5'- gGGGUGGGCUGGCugggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCGca--GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 41286 0.66 0.739107
Target:  5'- -cAGCAGcgcGCCGGCGUagugcgcgacguuucCgGCGCCGccGGCc -3'
miRNA:   3'- acUCGUC---UGGCCGCA---------------GaCGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 34319 0.77 0.191855
Target:  5'- cGGGCGcGCUuGCGUCUGCGgCGAGCg -3'
miRNA:   3'- aCUCGUcUGGcCGCAGACGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34262 0.76 0.216669
Target:  5'- aGGcGCAGACCGGCGcgCgGCGgCUGGGCg -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-GaCGC-GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 11308 0.75 0.232843
Target:  5'- aUGGGCgcgcccgccgAGGCCGGCGggcggCUgGCGCCgGAGCg -3'
miRNA:   3'- -ACUCG----------UCUGGCCGCa----GA-CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 102685 0.75 0.238455
Target:  5'- gGGGCGGGgCGGgGgcaggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCUgGCCgCaga--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 131935 0.74 0.274532
Target:  5'- cGAGCGGcugcgcgaGCUGGCGgaccgCUGCGCCGucGCc -3'
miRNA:   3'- aCUCGUC--------UGGCCGCa----GACGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 33509 0.73 0.307832
Target:  5'- cGGGCGGcgGCgGGCGcCgccgcggagGCGCCGGGCg -3'
miRNA:   3'- aCUCGUC--UGgCCGCaGa--------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 25225 0.74 0.287494
Target:  5'- aGAGCAuGAUCGGCGUCgcgGgGacaaCGAGCu -3'
miRNA:   3'- aCUCGU-CUGGCCGCAGa--CgCg---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53709 0.74 0.274532
Target:  5'- cGAGUcuguGGGCCGGCGgCUgGCGCUGuGCg -3'
miRNA:   3'- aCUCG----UCUGGCCGCaGA-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 77451 0.77 0.173833
Target:  5'- cGAGCAG-UCGGCGggcuggggCggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCuGGCCGCa-------Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 12971 0.74 0.292812
Target:  5'- aUGAGCAGGCCauGGCGcugcaguaccggcUggggguggggggcCUGUGCCGAGCa -3'
miRNA:   3'- -ACUCGUCUGG--CCGC-------------A-------------GACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 117578 0.77 0.187202
Target:  5'- gGGGCGcgcuGcCCGGCcaaaacGUCUGCGCCGGGCu -3'
miRNA:   3'- aCUCGU----CuGGCCG------CAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 69305 0.74 0.274532
Target:  5'- cGGGCGGACCGGCugccuUUUGgGCgCGGGCc -3'
miRNA:   3'- aCUCGUCUGGCCGc----AGACgCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 9655 0.74 0.300933
Target:  5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3'
miRNA:   3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 34623 0.73 0.32199
Target:  5'- cGAGgaAGuCCGGCGcCUGCgcgccgagGCCGAGCg -3'
miRNA:   3'- aCUCg-UCuGGCCGCaGACG--------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 51059 0.77 0.191855
Target:  5'- cGAGCAGGCCaccgaGGCGUUcGUGCgCGGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAGaCGCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 130518 0.76 0.221951
Target:  5'- cGAGC--GCCGGCGggccgCccGCGCCGAGCu -3'
miRNA:   3'- aCUCGucUGGCCGCa----Ga-CGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.