miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 118256 1.03 0.002368
Target:  5'- gUAAACCUGCGCGGCGUGCGCCUGCUUu -3'
miRNA:   3'- -AUUUGGACGCGCCGCACGCGGACGAA- -5'
6361 5' -59.2 NC_001847.1 + 14336 0.78 0.146952
Target:  5'- gGGGCCggGCGUGGUGgcgGCGCCUGCg- -3'
miRNA:   3'- aUUUGGa-CGCGCCGCa--CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 123793 0.76 0.183398
Target:  5'- gGGGCCUGCGCGGCGgcggcagcggcagGCGCCguccugGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGCa------------CGCGGa-----CGaa -5'
6361 5' -59.2 NC_001847.1 + 88243 0.75 0.226482
Target:  5'- gAGGCCgGCGCGGCGcgggGCGCCggGCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa---CGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 66235 0.74 0.25601
Target:  5'- cGAACCUcaGCGCGGCG-GCGCUcggcaUGCUg -3'
miRNA:   3'- aUUUGGA--CGCGCCGCaCGCGG-----ACGAa -5'
6361 5' -59.2 NC_001847.1 + 105564 0.74 0.249862
Target:  5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 2751 0.74 0.249862
Target:  5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 95657 0.74 0.25601
Target:  5'- gGAGCCUGCGCGGCGgGCuggucuccaugGCaCUGCa- -3'
miRNA:   3'- aUUUGGACGCGCCGCaCG-----------CG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 28762 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 83114 0.73 0.30255
Target:  5'- aUGAGCCccugGCGCGaGCGcuagugcGCGCCUGCUg -3'
miRNA:   3'- -AUUUGGa---CGCGC-CGCa------CGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 79016 0.73 0.309707
Target:  5'- gGAGgCUGCGCGGCGUGCaccGCCaaaugGCa- -3'
miRNA:   3'- aUUUgGACGCGCCGCACG---CGGa----CGaa -5'
6361 5' -59.2 NC_001847.1 + 56072 0.73 0.281846
Target:  5'- gAAGCCUGCGCGGCugagcGCGCCcggggUGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGca---CGCGG-----ACGaa -5'
6361 5' -59.2 NC_001847.1 + 34267 0.73 0.281846
Target:  5'- cAGACCggcGCGCGGCGgcuggGCGCCgcGCUc -3'
miRNA:   3'- aUUUGGa--CGCGCCGCa----CGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 131575 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 32629 0.73 0.28862
Target:  5'- --cACCgGCGCGGCGcGCGCuCUGCc- -3'
miRNA:   3'- auuUGGaCGCGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 63326 0.73 0.309707
Target:  5'- ---uUCaGCGCGGCGUGCuCCUGCUc -3'
miRNA:   3'- auuuGGaCGCGCCGCACGcGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 94359 0.73 0.295521
Target:  5'- aGGACgCUgGCGCGGCG-GCGUCUGCc- -3'
miRNA:   3'- aUUUG-GA-CGCGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 27995 0.73 0.301841
Target:  5'- cUGGGCCgcgcugcagcGCGCGGCGUgccgcgcuuacgaGCGCCUGCa- -3'
miRNA:   3'- -AUUUGGa---------CGCGCCGCA-------------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 39841 0.72 0.324405
Target:  5'- ---uCCUGCGUGGCGcGCGCCaGCc- -3'
miRNA:   3'- auuuGGACGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 44085 0.72 0.316992
Target:  5'- --uGCCUGCuGCGGCGUcuGCGCCcGCc- -3'
miRNA:   3'- auuUGGACG-CGCCGCA--CGCGGaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.