miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 129251 0.66 0.702609
Target:  5'- -cAAUCUGCGaCGGCGcgGCcGCcCUGCg- -3'
miRNA:   3'- auUUGGACGC-GCCGCa-CG-CG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 35201 0.66 0.702609
Target:  5'- gGAGCgC-GCGCGGCuggGCGCcCUGCg- -3'
miRNA:   3'- aUUUG-GaCGCGCCGca-CGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 85185 0.66 0.702609
Target:  5'- -cGGCCUGCGCGuacuCG-GCGCCggGCa- -3'
miRNA:   3'- auUUGGACGCGCc---GCaCGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 104383 0.66 0.702609
Target:  5'- gAGGCCaGCaCGGCGcGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGcGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 93627 0.66 0.702609
Target:  5'- -cGGCCgGCGCGGCcgcgGaCGUCUGCa- -3'
miRNA:   3'- auUUGGaCGCGCCGca--C-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 1570 0.66 0.702609
Target:  5'- gAGGCCaGCaCGGCGcGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGcGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 43275 0.66 0.701591
Target:  5'- --cACCUGCuGCGacgccgcGCGUGCGCggGCUg -3'
miRNA:   3'- auuUGGACG-CGC-------CGCACGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 76888 0.66 0.692402
Target:  5'- gAGGCCUGCcugacggaggGCGGuCGcGCGCCgccGCUg -3'
miRNA:   3'- aUUUGGACG----------CGCC-GCaCGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 112531 0.66 0.692402
Target:  5'- ---cCCUGCGCGGCcacuCGCUUGCc- -3'
miRNA:   3'- auuuGGACGCGCCGcac-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 133565 0.66 0.692402
Target:  5'- cGAGCggcGCGCuGGCGcGCGCCgUGCUg -3'
miRNA:   3'- aUUUGga-CGCG-CCGCaCGCGG-ACGAa -5'
6361 5' -59.2 NC_001847.1 + 94222 0.66 0.692402
Target:  5'- gGAGCU--CGCGGCGggGCGCCcGCg- -3'
miRNA:   3'- aUUUGGacGCGCCGCa-CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 22087 0.66 0.692402
Target:  5'- cAGACgUGCGCcgacGCGcUGCGgCUGCUg -3'
miRNA:   3'- aUUUGgACGCGc---CGC-ACGCgGACGAa -5'
6361 5' -59.2 NC_001847.1 + 9718 0.66 0.692402
Target:  5'- ---cCCUGCGCGGCcacuCGCUUGCc- -3'
miRNA:   3'- auuuGGACGCGCCGcac-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 106698 0.66 0.692402
Target:  5'- -cGGCCauagGCacuuuccaguugGCGGCGUGCGCCaggGCg- -3'
miRNA:   3'- auUUGGa---CG------------CGCCGCACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 79270 0.66 0.692402
Target:  5'- cGGGCC-GCGCGGCGaagcgGUGCCgGUg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 44288 0.66 0.692402
Target:  5'- --cACCggcgGCGCGGCGcgGCGCg-GCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa-CGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 20192 0.66 0.692402
Target:  5'- gUAGACC-GCGgGGCG-GCGCCccGCc- -3'
miRNA:   3'- -AUUUGGaCGCgCCGCaCGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 30752 0.66 0.692402
Target:  5'- cGAGCggcGCGCuGGCGcGCGCCgUGCUg -3'
miRNA:   3'- aUUUGga-CGCG-CCGCaCGCGG-ACGAa -5'
6361 5' -59.2 NC_001847.1 + 36153 0.66 0.691378
Target:  5'- cGGGCCUGCaGCGGC-UGCaggcaacGCUUGCg- -3'
miRNA:   3'- aUUUGGACG-CGCCGcACG-------CGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 49033 0.66 0.682142
Target:  5'- gGAGCCgcucGUGCaGCGUGCGCguaaagCUGCg- -3'
miRNA:   3'- aUUUGGa---CGCGcCGCACGCG------GACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.