miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 84242 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGUacGUG-GCCUGCa- -3'
miRNA:   3'- auUUGGaCGCGCCG--CACgCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 2096 0.66 0.67184
Target:  5'- gGGGCCcGCGCGGCGgcGgGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa-CgCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 94213 0.66 0.655292
Target:  5'- -cGACCUGCgGCGGCGgcacgaaaaggccguUGUGCC-GCg- -3'
miRNA:   3'- auUUGGACG-CGCCGC---------------ACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 80360 0.66 0.651146
Target:  5'- cGGAag-GCGCGGCGUGCGCaaaacccauuaUGCa- -3'
miRNA:   3'- aUUUggaCGCGCCGCACGCGg----------ACGaa -5'
6361 5' -59.2 NC_001847.1 + 12219 0.66 0.649072
Target:  5'- -uGGCUUGCGCGGCGcGCGCacacccgaacgGCg- -3'
miRNA:   3'- auUUGGACGCGCCGCaCGCGga---------CGaa -5'
6361 5' -59.2 NC_001847.1 + 30611 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 118449 0.67 0.630389
Target:  5'- ---uCCUGCugGUGGCGgccucGUGCCUGCg- -3'
miRNA:   3'- auuuGGACG--CGCCGCa----CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 100567 0.67 0.630389
Target:  5'- cGGGCCuUGCGCaggucGGCGUGCagcuuggcgGCCUGUg- -3'
miRNA:   3'- aUUUGG-ACGCG-----CCGCACG---------CGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 99210 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGCGgcGCGCC-GCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 49033 0.66 0.682142
Target:  5'- gGAGCCgcucGUGCaGCGUGCGCguaaagCUGCg- -3'
miRNA:   3'- aUUUGGa---CGCGcCGCACGCG------GACGaa -5'
6361 5' -59.2 NC_001847.1 + 80737 0.66 0.682142
Target:  5'- gAGGCCaacCGCGGCG-GCGCCcGCc- -3'
miRNA:   3'- aUUUGGac-GCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 10699 0.66 0.682142
Target:  5'- --cGCCcggGCGCGGCccGCGCCgGCc- -3'
miRNA:   3'- auuUGGa--CGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 1570 0.66 0.702609
Target:  5'- gAGGCCaGCaCGGCGcGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGcGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 9718 0.66 0.692402
Target:  5'- ---cCCUGCGCGGCcacuCGCUUGCc- -3'
miRNA:   3'- auuuGGACGCGCCGcac-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 106698 0.66 0.692402
Target:  5'- -cGGCCauagGCacuuuccaguugGCGGCGUGCGCCaggGCg- -3'
miRNA:   3'- auUUGGa---CG------------CGCCGCACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 30752 0.66 0.692402
Target:  5'- cGAGCggcGCGCuGGCGcGCGCCgUGCUg -3'
miRNA:   3'- aUUUGga-CGCG-CCGCaCGCGG-ACGAa -5'
6361 5' -59.2 NC_001847.1 + 20192 0.66 0.692402
Target:  5'- gUAGACC-GCGgGGCG-GCGCCccGCc- -3'
miRNA:   3'- -AUUUGGaCGCgCCGCaCGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 44288 0.66 0.692402
Target:  5'- --cACCggcgGCGCGGCGcgGCGCg-GCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa-CGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 105327 0.66 0.682142
Target:  5'- cGGACCUGCGuCGuCGUggGCGCCgggGCg- -3'
miRNA:   3'- aUUUGGACGC-GCcGCA--CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 35925 0.66 0.682142
Target:  5'- aUGGACCggcggucGCGCGcGCuUGCGCCUGg-- -3'
miRNA:   3'- -AUUUGGa------CGCGC-CGcACGCGGACgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.