Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6362 | 3' | -58.6 | NC_001847.1 | + | 118015 | 1.02 | 0.003228 |
Target: 5'- cAACCUGCGCUGCGACGUCUCCUGGUUc -3' miRNA: 3'- -UUGGACGCGACGCUGCAGAGGACCAA- -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 20863 | 0.7 | 0.474982 |
Target: 5'- -gUCUGCGCUGCGGCGgcgCUCuuuauaCUGGg- -3' miRNA: 3'- uuGGACGCGACGCUGCa--GAG------GACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 28200 | 0.7 | 0.474982 |
Target: 5'- cGCCUGCGCgccacgGCGGCGUUcggCCcGGUg -3' miRNA: 3'- uUGGACGCGa-----CGCUGCAGa--GGaCCAa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 95658 | 0.7 | 0.494222 |
Target: 5'- gAGCCUGCGCgGCGGgcugGUCUCCaUGGc- -3' miRNA: 3'- -UUGGACGCGaCGCUg---CAGAGG-ACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 123794 | 0.69 | 0.513809 |
Target: 5'- gGGCCUGCGCgGCGGCGgcagCggcaggcgccgUCCUGGc- -3' miRNA: 3'- -UUGGACGCGaCGCUGCa---G-----------AGGACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 115816 | 0.69 | 0.523721 |
Target: 5'- cGCgCUGCGCUGCGGCGggCUCUgcGGa- -3' miRNA: 3'- uUG-GACGCGACGCUGCa-GAGGa-CCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 51309 | 0.68 | 0.594808 |
Target: 5'- cAGCCcGUGCUGCGGCGgcgCUUCaUGGa- -3' miRNA: 3'- -UUGGaCGCGACGCUGCa--GAGG-ACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 36482 | 0.68 | 0.615472 |
Target: 5'- cACCUGCGCgggcgcGUGGCGgccCUUCUGGg- -3' miRNA: 3'- uUGGACGCGa-----CGCUGCa--GAGGACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 71765 | 0.67 | 0.646544 |
Target: 5'- ----cGCGCUGCGGCGgCUCgUGGa- -3' miRNA: 3'- uuggaCGCGACGCUGCaGAGgACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 35865 | 0.67 | 0.67751 |
Target: 5'- cACCUcgacGCGCUGCGGCGgCagCUGGa- -3' miRNA: 3'- uUGGA----CGCGACGCUGCaGagGACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 102697 | 0.66 | 0.697979 |
Target: 5'- gGGCgUGUGCUGCGGCagcgCCUGGg- -3' miRNA: 3'- -UUGgACGCGACGCUGcagaGGACCaa -5' |
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6362 | 3' | -58.6 | NC_001847.1 | + | 101263 | 0.66 | 0.708133 |
Target: 5'- cGGCCacGCGCgGCGGCGcCUCCUGc-- -3' miRNA: 3'- -UUGGa-CGCGaCGCUGCaGAGGACcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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