miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 70124 0.66 0.993894
Target:  5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3'
miRNA:   3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5'
6362 5' -50.3 NC_001847.1 + 37503 0.66 0.994751
Target:  5'- -cGACGccuuuuUGGcGCGCCGCcUggACGCa -3'
miRNA:   3'- gaUUGU------ACCuCGCGGCGaAaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 61262 0.66 0.993894
Target:  5'- --uGCGcGGGGCGCCGgCggaacugACGCGc -3'
miRNA:   3'- gauUGUaCCUCGCGGC-Gaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 27408 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 35918 0.67 0.981026
Target:  5'- --cGCGUGGGagccuuuguggcggcGCGCCGCc---GCGCGg -3'
miRNA:   3'- gauUGUACCU---------------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49802 0.67 0.984308
Target:  5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3'
miRNA:   3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132811 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3949 0.67 0.986129
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 23270 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 102744 0.67 0.986129
Target:  5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3'
miRNA:   3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 85845 0.67 0.987782
Target:  5'- --uGCGUcGAGCGCguCGCUg--GCGCGg -3'
miRNA:   3'- gauUGUAcCUCGCG--GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 72328 0.67 0.986129
Target:  5'- -gGACGcGGAcGCGCUGCUggUGCuGCa -3'
miRNA:   3'- gaUUGUaCCU-CGCGGCGAaaAUG-CGc -5'
6362 5' -50.3 NC_001847.1 + 104724 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 119031 0.67 0.987464
Target:  5'- ----gGUGGGGCGCaCGCUgugggaagcggUACGCc -3'
miRNA:   3'- gauugUACCUCGCG-GCGAaa---------AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 126083 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 135135 0.67 0.987782
Target:  5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3'
miRNA:   3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34279 0.67 0.980131
Target:  5'- -cGGCGgcUGG-GCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGU--ACCuCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53414 0.67 0.980131
Target:  5'- ---cCAUGGGGCuggagggcgcguGCCGCUUccaccgGCGCGc -3'
miRNA:   3'- gauuGUACCUCG------------CGGCGAAaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 64149 0.67 0.982312
Target:  5'- -gGACAUGcGGCccgccaugcagGCCGCU--UGCGCGg -3'
miRNA:   3'- gaUUGUACcUCG-----------CGGCGAaaAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.