miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 120837 0.67 0.986129
Target:  5'- -gAGCAgcgGGAGCgggGCCGCg---ACGCc -3'
miRNA:   3'- gaUUGUa--CCUCG---CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 77811 0.67 0.986129
Target:  5'- -gGACGUGGcGCGgCGCgugccggccuUUUUGCGCc -3'
miRNA:   3'- gaUUGUACCuCGCgGCG----------AAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 1098 0.67 0.987782
Target:  5'- gUGACucUGGAGaCGCCGCg--UGCcccuGCGa -3'
miRNA:   3'- gAUUGu-ACCUC-GCGGCGaaaAUG----CGC- -5'
6362 5' -50.3 NC_001847.1 + 132811 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 135135 0.67 0.987782
Target:  5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3'
miRNA:   3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 71060 0.67 0.982312
Target:  5'- -gGACGUGGAcccggugcugGCGgCGCUcggccgGCGCGg -3'
miRNA:   3'- gaUUGUACCU----------CGCgGCGAaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70018 0.67 0.983132
Target:  5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3'
miRNA:   3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 85845 0.67 0.987782
Target:  5'- --uGCGUcGAGCGCguCGCUg--GCGCGg -3'
miRNA:   3'- gauUGUAcCUCGCG--GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 42050 0.67 0.980131
Target:  5'- aCUGGCucgugugccUGGGGCugguGCCGCUgcgGCGCa -3'
miRNA:   3'- -GAUUGu--------ACCUCG----CGGCGAaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 71862 0.67 0.987782
Target:  5'- -cAGCgGUGGaAGCgGCCGCgagcGCGCGg -3'
miRNA:   3'- gaUUG-UACC-UCG-CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89878 0.67 0.983923
Target:  5'- aUGGCuuuUGGGGCGCCuucggggACGCGg -3'
miRNA:   3'- gAUUGu--ACCUCGCGGcgaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29998 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53001 0.67 0.984117
Target:  5'- -aGGCAUGGcggagccgacagcGGCgGCCGCU---GCGCGc -3'
miRNA:   3'- gaUUGUACC-------------UCG-CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3949 0.67 0.986129
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 23270 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 119031 0.67 0.987464
Target:  5'- ----gGUGGGGCGCaCGCUgugggaagcggUACGCc -3'
miRNA:   3'- gauugUACCUCGCG-GCGAaa---------AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 104724 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 72328 0.67 0.986129
Target:  5'- -gGACGcGGAcGCGCUGCUggUGCuGCa -3'
miRNA:   3'- gaUUGUaCCU-CGCGGCGAaaAUG-CGc -5'
6362 5' -50.3 NC_001847.1 + 67661 0.67 0.986129
Target:  5'- ------aGGGGCGCgGCg---GCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGgCGaaaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.