Results 81 - 100 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 21202 | 0.68 | 0.977755 |
Target: 5'- -cGGCGUaGGAGaCGCCGCcgcgaccGCGCGc -3' miRNA: 3'- gaUUGUA-CCUC-GCGGCGaaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 32271 | 0.68 | 0.977755 |
Target: 5'- --uGCGUGGcucGCGCCGUccgcgugGCGCGg -3' miRNA: 3'- gauUGUACCu--CGCGGCGaaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 32660 | 0.68 | 0.975176 |
Target: 5'- -cGAgGUGGAcgGCGCCGgCg---GCGCGg -3' miRNA: 3'- gaUUgUACCU--CGCGGC-GaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 63411 | 0.68 | 0.975176 |
Target: 5'- cCUcGCAcgGGAGCGCaCGCg---GCGCc -3' miRNA: 3'- -GAuUGUa-CCUCGCG-GCGaaaaUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 88273 | 0.68 | 0.969375 |
Target: 5'- -gGACGgggGGAGCGCUucgccuGCUgggccgACGCGg -3' miRNA: 3'- gaUUGUa--CCUCGCGG------CGAaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 43235 | 0.68 | 0.972385 |
Target: 5'- gUGGCGgugGGGGCG-CGCgggcgGCGCGg -3' miRNA: 3'- gAUUGUa--CCUCGCgGCGaaaa-UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 88306 | 0.68 | 0.975176 |
Target: 5'- --cGCG-GGGGCgGUCGaCUUUUGCGCGc -3' miRNA: 3'- gauUGUaCCUCG-CGGC-GAAAAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 87405 | 0.68 | 0.975176 |
Target: 5'- uUGACAUuGAGUGCCuGUcg-UGCGCGg -3' miRNA: 3'- gAUUGUAcCUCGCGG-CGaaaAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 102660 | 0.68 | 0.969375 |
Target: 5'- --cGCcgGGAGCgGCCGCgaggGCGgGg -3' miRNA: 3'- gauUGuaCCUCG-CGGCGaaaaUGCgC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 34764 | 0.68 | 0.969375 |
Target: 5'- gCUGGCGcGGcugcGCGCCGCggccgcgGCGCGc -3' miRNA: 3'- -GAUUGUaCCu---CGCGGCGaaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 13068 | 0.68 | 0.966139 |
Target: 5'- uUGGCGUGacGCGCUGCU---GCGCGa -3' miRNA: 3'- gAUUGUACcuCGCGGCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 36977 | 0.68 | 0.975176 |
Target: 5'- -gGAC-UGGGcGCGCCGCg---GCGUGc -3' miRNA: 3'- gaUUGuACCU-CGCGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 35921 | 0.68 | 0.975176 |
Target: 5'- -cGGCAUGGAccggcggucGCGCgCGCU--UGCGCc -3' miRNA: 3'- gaUUGUACCU---------CGCG-GCGAaaAUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 132698 | 0.68 | 0.972385 |
Target: 5'- -cGAUcgGGAGCucGCUGCggcugGCGCGa -3' miRNA: 3'- gaUUGuaCCUCG--CGGCGaaaa-UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70368 | 0.68 | 0.966139 |
Target: 5'- -gAGCGagGGGGCGCCGgg---GCGCGa -3' miRNA: 3'- gaUUGUa-CCUCGCGGCgaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 45205 | 0.68 | 0.977755 |
Target: 5'- uCUcGCAgcgcGAGCGCCGCcgcgaGCGCGg -3' miRNA: 3'- -GAuUGUac--CUCGCGGCGaaaa-UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 49802 | 0.67 | 0.984308 |
Target: 5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3' miRNA: 3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 1911 | 0.67 | 0.986129 |
Target: 5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3' miRNA: 3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 102744 | 0.67 | 0.986129 |
Target: 5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3' miRNA: 3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 78855 | 0.67 | 0.986129 |
Target: 5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3' miRNA: 3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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