miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 126847 0.67 0.982312
Target:  5'- cCUGGCcccccggGGAGCccuGCCGCUUUgucuUGCGa -3'
miRNA:   3'- -GAUUGua-----CCUCG---CGGCGAAAau--GCGC- -5'
6362 5' -50.3 NC_001847.1 + 29998 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 42050 0.67 0.980131
Target:  5'- aCUGGCucgugugccUGGGGCugguGCCGCUgcgGCGCa -3'
miRNA:   3'- -GAUUGu--------ACCUCG----CGGCGAaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 106655 0.67 0.979204
Target:  5'- gCUAGCGgc-GGCGCCGCggcguccgcgGCGCGu -3'
miRNA:   3'- -GAUUGUaccUCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 52486 0.67 0.982312
Target:  5'- -gAGCGcGGcGCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90701 0.67 0.982312
Target:  5'- --cGCGUGccgcGCGCCGCgcccccgUGCGCGa -3'
miRNA:   3'- gauUGUACcu--CGCGGCGaaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3315 0.67 0.984308
Target:  5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 32322 0.67 0.987782
Target:  5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3'
miRNA:   3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 71862 0.67 0.987782
Target:  5'- -cAGCgGUGGaAGCgGCCGCgagcGCGCGg -3'
miRNA:   3'- gaUUG-UACC-UCG-CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3949 0.67 0.986129
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102744 0.67 0.986129
Target:  5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3'
miRNA:   3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 78855 0.67 0.986129
Target:  5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3'
miRNA:   3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49802 0.67 0.984308
Target:  5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3'
miRNA:   3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 75268 0.67 0.984308
Target:  5'- -cAACGcGGAG-GCCGCgc--GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCgCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 45905 0.67 0.984308
Target:  5'- cCUGGCcgGuccgucgguaaaGAGCGCCGCgugccacUGCGCa -3'
miRNA:   3'- -GAUUGuaC------------CUCGCGGCGaaa----AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 70018 0.67 0.983132
Target:  5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3'
miRNA:   3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 64149 0.67 0.982312
Target:  5'- -gGACAUGcGGCccgccaugcagGCCGCU--UGCGCGg -3'
miRNA:   3'- gaUUGUACcUCG-----------CGGCGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 35918 0.67 0.981026
Target:  5'- --cGCGUGGGagccuuuguggcggcGCGCCGCc---GCGCGg -3'
miRNA:   3'- gauUGUACCU---------------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34279 0.67 0.980131
Target:  5'- -cGGCGgcUGG-GCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGU--ACCuCGCGGCGaaaauGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.