miRNA display CGI


Results 121 - 140 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 3949 0.67 0.986129
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102744 0.67 0.986129
Target:  5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3'
miRNA:   3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 78855 0.67 0.986129
Target:  5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3'
miRNA:   3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49802 0.67 0.984308
Target:  5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3'
miRNA:   3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 45905 0.67 0.984308
Target:  5'- cCUGGCcgGuccgucgguaaaGAGCGCCGCgugccacUGCGCa -3'
miRNA:   3'- -GAUUGuaC------------CUCGCGGCGaaa----AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 75268 0.67 0.984308
Target:  5'- -cAACGcGGAG-GCCGCgc--GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCgCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132811 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 126083 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 1098 0.67 0.987782
Target:  5'- gUGACucUGGAGaCGCCGCg--UGCcccuGCGa -3'
miRNA:   3'- gAUUGu-ACCUC-GCGGCGaaaAUG----CGC- -5'
6362 5' -50.3 NC_001847.1 + 89878 0.67 0.983923
Target:  5'- aUGGCuuuUGGGGCGCCuucggggACGCGg -3'
miRNA:   3'- gAUUGu--ACCUCGCGGcgaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3315 0.67 0.984308
Target:  5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 29379 0.67 0.984308
Target:  5'- -cGGCGgccGGAGCuGCCGC----GCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCG-CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50547 0.67 0.986129
Target:  5'- gCUGGCGUGcGGGUuuugcccgcaGCUGCUg--GCGCGc -3'
miRNA:   3'- -GAUUGUAC-CUCG----------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90701 0.67 0.982312
Target:  5'- --cGCGUGccgcGCGCCGCgcccccgUGCGCGa -3'
miRNA:   3'- gauUGUACcu--CGCGGCGaaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 119031 0.67 0.987464
Target:  5'- ----gGUGGGGCGCaCGCUgugggaagcggUACGCc -3'
miRNA:   3'- gauugUACCUCGCG-GCGAaa---------AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 2214 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130524 0.66 0.991843
Target:  5'- --uACGUGGucccagAGCGCUGCgacgACGUGg -3'
miRNA:   3'- gauUGUACC------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106725 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53832 0.66 0.99371
Target:  5'- -gAGCG-GGGGCGCUGaagagccgGCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGGCgaaaa---UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.