miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 132142 0.69 0.945407
Target:  5'- -cGACgcgGUGGAGCGCgCGCggcuccagcGCGCGg -3'
miRNA:   3'- gaUUG---UACCUCGCG-GCGaaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29329 0.69 0.945407
Target:  5'- -cGACgcgGUGGAGCGCgCGCggcuccagcGCGCGg -3'
miRNA:   3'- gaUUG---UACCUCGCG-GCGaaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 103365 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 552 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 98593 0.69 0.946331
Target:  5'- -----uUGGGGCGCCggcGCUUgggcgGCGCGg -3'
miRNA:   3'- gauuguACCUCGCGG---CGAAaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 85366 0.69 0.946331
Target:  5'- -gGGCGUGGcaAGCGUCGCca--GCGCGu -3'
miRNA:   3'- gaUUGUACC--UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56532 0.69 0.946331
Target:  5'- -gGACGUGGaAGUGCCGCg---GCgGCa -3'
miRNA:   3'- gaUUGUACC-UCGCGGCGaaaaUG-CGc -5'
6362 5' -50.3 NC_001847.1 + 89057 0.69 0.946331
Target:  5'- -cGGCAUGGcGCGCCGggUUUcggcgGCGCu -3'
miRNA:   3'- gaUUGUACCuCGCGGCgaAAA-----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 36094 0.69 0.946331
Target:  5'- gCUGGC--GGAGCGCgGCg---ACGCGc -3'
miRNA:   3'- -GAUUGuaCCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 51269 0.69 0.950793
Target:  5'- -cGAgAUGcAGCGCCGCg---GCGCGc -3'
miRNA:   3'- gaUUgUACcUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29680 0.69 0.950793
Target:  5'- -cGGCGUGGcgcagcugauGGCGCugauCGCUUggGCGCGa -3'
miRNA:   3'- gaUUGUACC----------UCGCG----GCGAAaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 116162 0.69 0.950793
Target:  5'- gCUGGCGgccGcGGGCGCCGCggccGCGCu -3'
miRNA:   3'- -GAUUGUa--C-CUCGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 62691 0.69 0.955
Target:  5'- ---cCGUGGugcAGCGCCGCguccagcgUGCGCa -3'
miRNA:   3'- gauuGUACC---UCGCGGCGaaa-----AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 128116 0.69 0.958957
Target:  5'- -cGACGUGGcgcuGGCGCUGgCggaUGCGCGg -3'
miRNA:   3'- gaUUGUACC----UCGCGGC-GaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 14944 0.69 0.958957
Target:  5'- --uGCGaGcGGGCGCCGCUc--GCGCGg -3'
miRNA:   3'- gauUGUaC-CUCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 10854 0.69 0.962668
Target:  5'- --cGCGUGGccgaGGCGCgGCgg--GCGCGg -3'
miRNA:   3'- gauUGUACC----UCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 36793 0.69 0.962668
Target:  5'- -gGACuuUGGGGCguuuuGCCGCUUcgUGCGCc -3'
miRNA:   3'- gaUUGu-ACCUCG-----CGGCGAAa-AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 50634 0.69 0.962668
Target:  5'- -cGACAUGGAcGCGCUGaag-UAUGUGg -3'
miRNA:   3'- gaUUGUACCU-CGCGGCgaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70368 0.68 0.966139
Target:  5'- -gAGCGagGGGGCGCCGgg---GCGCGa -3'
miRNA:   3'- gaUUGUa-CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 13068 0.68 0.966139
Target:  5'- uUGGCGUGacGCGCUGCU---GCGCGa -3'
miRNA:   3'- gAUUGUACcuCGCGGCGAaaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.