miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 70368 0.68 0.966139
Target:  5'- -gAGCGagGGGGCGCCGgg---GCGCGa -3'
miRNA:   3'- gaUUGUa-CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88273 0.68 0.969375
Target:  5'- -gGACGgggGGAGCGCUucgccuGCUgggccgACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGG------CGAaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102660 0.68 0.969375
Target:  5'- --cGCcgGGAGCgGCCGCgaggGCGgGg -3'
miRNA:   3'- gauUGuaCCUCG-CGGCGaaaaUGCgC- -5'
6362 5' -50.3 NC_001847.1 + 34764 0.68 0.969375
Target:  5'- gCUGGCGcGGcugcGCGCCGCggccgcgGCGCGc -3'
miRNA:   3'- -GAUUGUaCCu---CGCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43235 0.68 0.972385
Target:  5'- gUGGCGgugGGGGCG-CGCgggcgGCGCGg -3'
miRNA:   3'- gAUUGUa--CCUCGCgGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132698 0.68 0.972385
Target:  5'- -cGAUcgGGAGCucGCUGCggcugGCGCGa -3'
miRNA:   3'- gaUUGuaCCUCG--CGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 35921 0.68 0.975176
Target:  5'- -cGGCAUGGAccggcggucGCGCgCGCU--UGCGCc -3'
miRNA:   3'- gaUUGUACCU---------CGCG-GCGAaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 36977 0.68 0.975176
Target:  5'- -gGAC-UGGGcGCGCCGCg---GCGUGc -3'
miRNA:   3'- gaUUGuACCU-CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 87405 0.68 0.975176
Target:  5'- uUGACAUuGAGUGCCuGUcg-UGCGCGg -3'
miRNA:   3'- gAUUGUAcCUCGCGG-CGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88306 0.68 0.975176
Target:  5'- --cGCG-GGGGCgGUCGaCUUUUGCGCGc -3'
miRNA:   3'- gauUGUaCCUCG-CGGC-GAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 63411 0.68 0.975176
Target:  5'- cCUcGCAcgGGAGCGCaCGCg---GCGCc -3'
miRNA:   3'- -GAuUGUa-CCUCGCG-GCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 32660 0.68 0.975176
Target:  5'- -cGAgGUGGAcgGCGCCGgCg---GCGCGg -3'
miRNA:   3'- gaUUgUACCU--CGCGGC-GaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 21202 0.68 0.977755
Target:  5'- -cGGCGUaGGAGaCGCCGCcgcgaccGCGCGc -3'
miRNA:   3'- gaUUGUA-CCUC-GCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32271 0.68 0.977755
Target:  5'- --uGCGUGGcucGCGCCGUccgcgugGCGCGg -3'
miRNA:   3'- gauUGUACCu--CGCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 80201 0.68 0.977755
Target:  5'- -gGGCG-GGuGCGCCGCgaa-GCGCa -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 45205 0.68 0.977755
Target:  5'- uCUcGCAgcgcGAGCGCCGCcgcgaGCGCGg -3'
miRNA:   3'- -GAuUGUac--CUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106655 0.67 0.979204
Target:  5'- gCUAGCGgc-GGCGCCGCggcguccgcgGCGCGu -3'
miRNA:   3'- -GAUUGUaccUCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34279 0.67 0.980131
Target:  5'- -cGGCGgcUGG-GCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGU--ACCuCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 42050 0.67 0.980131
Target:  5'- aCUGGCucgugugccUGGGGCugguGCCGCUgcgGCGCa -3'
miRNA:   3'- -GAUUGu--------ACCUCG----CGGCGAaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 53414 0.67 0.980131
Target:  5'- ---cCAUGGGGCuggagggcgcguGCCGCUUccaccgGCGCGc -3'
miRNA:   3'- gauuGUACCUCG------------CGGCGAAaa----UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.