Results 81 - 100 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 78855 | 0.67 | 0.986129 |
Target: 5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3' miRNA: 3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 72328 | 0.67 | 0.986129 |
Target: 5'- -gGACGcGGAcGCGCUGCUggUGCuGCa -3' miRNA: 3'- gaUUGUaCCU-CGCGGCGAaaAUG-CGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 120837 | 0.67 | 0.986129 |
Target: 5'- -gAGCAgcgGGAGCgggGCCGCg---ACGCc -3' miRNA: 3'- gaUUGUa--CCUCG---CGGCGaaaaUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 3949 | 0.67 | 0.986129 |
Target: 5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3' miRNA: 3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 45905 | 0.67 | 0.984308 |
Target: 5'- cCUGGCcgGuccgucgguaaaGAGCGCCGCgugccacUGCGCa -3' miRNA: 3'- -GAUUGuaC------------CUCGCGGCGaaa----AUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 49802 | 0.67 | 0.984308 |
Target: 5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3' miRNA: 3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 3315 | 0.67 | 0.984308 |
Target: 5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3' miRNA: 3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 75268 | 0.67 | 0.984308 |
Target: 5'- -cAACGcGGAG-GCCGCgc--GCGCGg -3' miRNA: 3'- gaUUGUaCCUCgCGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 106128 | 0.67 | 0.984308 |
Target: 5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3' miRNA: 3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 29379 | 0.67 | 0.984308 |
Target: 5'- -cGGCGgccGGAGCuGCCGC----GCGCGa -3' miRNA: 3'- gaUUGUa--CCUCG-CGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 53001 | 0.67 | 0.984117 |
Target: 5'- -aGGCAUGGcggagccgacagcGGCgGCCGCU---GCGCGc -3' miRNA: 3'- gaUUGUACC-------------UCG-CGGCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 89878 | 0.67 | 0.983923 |
Target: 5'- aUGGCuuuUGGGGCGCCuucggggACGCGg -3' miRNA: 3'- gAUUGu--ACCUCGCGGcgaaaa-UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70018 | 0.67 | 0.983132 |
Target: 5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3' miRNA: 3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 32380 | 0.67 | 0.982312 |
Target: 5'- -cGGCGUcGcGGGCGUCGCgccUUGCGUGg -3' miRNA: 3'- gaUUGUA-C-CUCGCGGCGaa-AAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 52486 | 0.67 | 0.982312 |
Target: 5'- -gAGCGcGGcGCGCCGCgcu--CGCGg -3' miRNA: 3'- gaUUGUaCCuCGCGGCGaaaauGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 90701 | 0.67 | 0.982312 |
Target: 5'- --cGCGUGccgcGCGCCGCgcccccgUGCGCGa -3' miRNA: 3'- gauUGUACcu--CGCGGCGaaa----AUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 71060 | 0.67 | 0.982312 |
Target: 5'- -gGACGUGGAcccggugcugGCGgCGCUcggccgGCGCGg -3' miRNA: 3'- gaUUGUACCU----------CGCgGCGAaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 126847 | 0.67 | 0.982312 |
Target: 5'- cCUGGCcccccggGGAGCccuGCCGCUUUgucuUGCGa -3' miRNA: 3'- -GAUUGua-----CCUCG---CGGCGAAAau--GCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 64149 | 0.67 | 0.982312 |
Target: 5'- -gGACAUGcGGCccgccaugcagGCCGCU--UGCGCGg -3' miRNA: 3'- gaUUGUACcUCG-----------CGGCGAaaAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 35918 | 0.67 | 0.981026 |
Target: 5'- --cGCGUGGGagccuuuguggcggcGCGCCGCc---GCGCGg -3' miRNA: 3'- gauUGUACCU---------------CGCGGCGaaaaUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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