miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 38595 0.7 0.931383
Target:  5'- cCUGGCGUuGAGCGCgCGCgucgccugACGCGc -3'
miRNA:   3'- -GAUUGUAcCUCGCG-GCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 39589 0.7 0.936628
Target:  5'- ----gGUGGccccAGCGCUGCUgcgGCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 39758 0.66 0.988992
Target:  5'- gCUGACuuUGGAGCGUCGggcauguaugUUGCGCc -3'
miRNA:   3'- -GAUUGu-ACCUCGCGGCgaa-------AAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 41984 0.66 0.993894
Target:  5'- uCUGucuCGccGAGCGCUGCgucgGCGCGg -3'
miRNA:   3'- -GAUu--GUacCUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 42050 0.67 0.980131
Target:  5'- aCUGGCucgugugccUGGGGCugguGCCGCUgcgGCGCa -3'
miRNA:   3'- -GAUUGu--------ACCUCG----CGGCGAaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 42606 0.66 0.994751
Target:  5'- gUGACAgGGAcgGCGCCGC-----CGCGg -3'
miRNA:   3'- gAUUGUaCCU--CGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43120 0.66 0.98928
Target:  5'- aUGACGUGGAGCG--GCUcu--CGCGg -3'
miRNA:   3'- gAUUGUACCUCGCggCGAaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43235 0.68 0.972385
Target:  5'- gUGGCGgugGGGGCG-CGCgggcgGCGCGg -3'
miRNA:   3'- gAUUGUa--CCUCGCgGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43548 0.7 0.925874
Target:  5'- -cAACAc--GGCGCCGCggUUUGCGCGc -3'
miRNA:   3'- gaUUGUaccUCGCGGCGa-AAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43703 0.71 0.914065
Target:  5'- aCUGGCGUGcuuuGCGCgCGCUgc-GCGCGg -3'
miRNA:   3'- -GAUUGUACcu--CGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 44188 0.66 0.991843
Target:  5'- uCUGACcgcggGGAGCGCCGCcga---GCu -3'
miRNA:   3'- -GAUUGua---CCUCGCGGCGaaaaugCGc -5'
6362 5' -50.3 NC_001847.1 + 44440 0.66 0.994751
Target:  5'- --cGCAcgGGGGCGCgGC----GCGCGg -3'
miRNA:   3'- gauUGUa-CCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 45205 0.68 0.977755
Target:  5'- uCUcGCAgcgcGAGCGCCGCcgcgaGCGCGg -3'
miRNA:   3'- -GAuUGUac--CUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 45905 0.67 0.984308
Target:  5'- cCUGGCcgGuccgucgguaaaGAGCGCCGCgugccacUGCGCa -3'
miRNA:   3'- -GAUUGuaC------------CUCGCGGCGaaa----AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 46888 0.75 0.745213
Target:  5'- --cGCGUGcGAGCGCCGCUUca--GCGa -3'
miRNA:   3'- gauUGUAC-CUCGCGGCGAAaaugCGC- -5'
6362 5' -50.3 NC_001847.1 + 48077 0.66 0.98928
Target:  5'- -aGGCG-GGGGCGCaCGCc---GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCG-GCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49012 0.66 0.991843
Target:  5'- -aAGCcgGcAGCGCCGCgu---CGCGg -3'
miRNA:   3'- gaUUGuaCcUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49502 0.66 0.99063
Target:  5'- cCUGAUc---GGCGCCGCUUcgccggGCGCGg -3'
miRNA:   3'- -GAUUGuaccUCGCGGCGAAaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49802 0.67 0.984308
Target:  5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3'
miRNA:   3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50465 0.66 0.993616
Target:  5'- --cACGU-GAGCGCCGCgcgacagcaagcgGCGCGc -3'
miRNA:   3'- gauUGUAcCUCGCGGCGaaaa---------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.