miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 50547 0.67 0.986129
Target:  5'- gCUGGCGUGcGGGUuuugcccgcaGCUGCUg--GCGCGc -3'
miRNA:   3'- -GAUUGUAC-CUCG----------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50593 0.75 0.734972
Target:  5'- --uACcUGGAGCGCUGCg---ACGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50634 0.69 0.962668
Target:  5'- -cGACAUGGAcGCGCUGaag-UAUGUGg -3'
miRNA:   3'- gaUUGUACCU-CGCGGCgaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 51269 0.69 0.950793
Target:  5'- -cGAgAUGcAGCGCCGCg---GCGCGc -3'
miRNA:   3'- gaUUgUACcUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 52486 0.67 0.982312
Target:  5'- -gAGCGcGGcGCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 52633 0.74 0.755346
Target:  5'- --cGCGUGcgcGAGCGCCGCgccagACGCGa -3'
miRNA:   3'- gauUGUAC---CUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53001 0.67 0.984117
Target:  5'- -aGGCAUGGcggagccgacagcGGCgGCCGCU---GCGCGc -3'
miRNA:   3'- gaUUGUACC-------------UCG-CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53268 0.66 0.98928
Target:  5'- ------cGGGGCGCUGCgcgcccagGCGCGc -3'
miRNA:   3'- gauuguaCCUCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53414 0.67 0.980131
Target:  5'- ---cCAUGGGGCuggagggcgcguGCCGCUUccaccgGCGCGc -3'
miRNA:   3'- gauuGUACCUCG------------CGGCGAAaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53832 0.66 0.99371
Target:  5'- -gAGCG-GGGGCGCUGaagagccgGCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGGCgaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56048 0.71 0.887322
Target:  5'- -cGACGaccccUGGgaGGCGCCGCUgaagccUGCGCGg -3'
miRNA:   3'- gaUUGU-----ACC--UCGCGGCGAaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56532 0.69 0.946331
Target:  5'- -gGACGUGGaAGUGCCGCg---GCgGCa -3'
miRNA:   3'- gaUUGUACC-UCGCGGCGaaaaUG-CGc -5'
6362 5' -50.3 NC_001847.1 + 57685 0.66 0.99063
Target:  5'- -gGugGUGcuGGGCGCCGCgggUGcCGCGc -3'
miRNA:   3'- gaUugUAC--CUCGCGGCGaaaAU-GCGC- -5'
6362 5' -50.3 NC_001847.1 + 58896 0.66 0.994751
Target:  5'- -aAGCAcGGcaaauGCGCCGCgggcgggugUUGCGCa -3'
miRNA:   3'- gaUUGUaCCu----CGCGGCGaa-------AAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 60480 0.72 0.848354
Target:  5'- ---cCAUGGcGcCGCCGCUUUgUGCGCGc -3'
miRNA:   3'- gauuGUACCuC-GCGGCGAAA-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 60828 0.7 0.936628
Target:  5'- aUGGCGcgaGGGGCGcCCGCggcgcUGCGCGg -3'
miRNA:   3'- gAUUGUa--CCUCGC-GGCGaaa--AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 60872 0.66 0.994421
Target:  5'- -cAGCGcGGGGCgGCCGCgcccgggaagagUUGCGUGa -3'
miRNA:   3'- gaUUGUaCCUCG-CGGCGaa----------AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 61262 0.66 0.993894
Target:  5'- --uGCGcGGGGCGCCGgCggaacugACGCGc -3'
miRNA:   3'- gauUGUaCCUCGCGGC-Gaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 61318 0.66 0.994751
Target:  5'- -cGGCA-GGAcgcGCaGCCGCUgcaGCGCGg -3'
miRNA:   3'- gaUUGUaCCU---CG-CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 62691 0.69 0.955
Target:  5'- ---cCGUGGugcAGCGCCGCguccagcgUGCGCa -3'
miRNA:   3'- gauuGUACC---UCGCGGCGaaa-----AUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.