miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 63201 0.74 0.765358
Target:  5'- -cGACGUGcGGCGCgGCgccgUUUACGCGu -3'
miRNA:   3'- gaUUGUACcUCGCGgCGa---AAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 63411 0.68 0.975176
Target:  5'- cCUcGCAcgGGAGCGCaCGCg---GCGCc -3'
miRNA:   3'- -GAuUGUa-CCUCGCG-GCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 64149 0.67 0.982312
Target:  5'- -gGACAUGcGGCccgccaugcagGCCGCU--UGCGCGg -3'
miRNA:   3'- gaUUGUACcUCG-----------CGGCGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 64851 0.66 0.991373
Target:  5'- -cAGCGcGGcGCGCCGCgacccgccagGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 65234 0.71 0.907766
Target:  5'- uUAACG-GGGGCGgCGCUUUUcCGCc -3'
miRNA:   3'- gAUUGUaCCUCGCgGCGAAAAuGCGc -5'
6362 5' -50.3 NC_001847.1 + 65751 0.66 0.992927
Target:  5'- -gAGCGUGGuGGC-CCGCgg--GCGCa -3'
miRNA:   3'- gaUUGUACC-UCGcGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 65879 0.76 0.693125
Target:  5'- gCUGACGUGGGG-GCCGCccaUGCGCc -3'
miRNA:   3'- -GAUUGUACCUCgCGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 67267 0.76 0.682496
Target:  5'- --uACGUGGGGUGCCGCcgUUcccaGCGCGu -3'
miRNA:   3'- gauUGUACCUCGCGGCGaaAA----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 67661 0.67 0.986129
Target:  5'- ------aGGGGCGCgGCg---GCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 67991 0.66 0.99063
Target:  5'- -cGGCuUGGGGCgGCCGgUaUUACGCc -3'
miRNA:   3'- gaUUGuACCUCG-CGGCgAaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 68447 0.7 0.920102
Target:  5'- aUGGCGcgGGAGCGcCCGCUguggAgGCGa -3'
miRNA:   3'- gAUUGUa-CCUCGC-GGCGAaaa-UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 68901 0.72 0.880004
Target:  5'- -cAGCAUGccGAGCGCCGCcgcgcugaggUUcgGCGCGg -3'
miRNA:   3'- gaUUGUAC--CUCGCGGCG----------AAaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 68905 0.66 0.992927
Target:  5'- -cGGCccGGAGagugcaGCC-CUUUUGCGCGc -3'
miRNA:   3'- gaUUGuaCCUCg-----CGGcGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70018 0.67 0.983132
Target:  5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3'
miRNA:   3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70124 0.66 0.993894
Target:  5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3'
miRNA:   3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5'
6362 5' -50.3 NC_001847.1 + 70368 0.68 0.966139
Target:  5'- -gAGCGagGGGGCGCCGgg---GCGCGa -3'
miRNA:   3'- gaUUGUa-CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70705 0.7 0.931383
Target:  5'- -cGGCGgcgGGGGCGcCCGCggcgaGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGC-GGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 71060 0.67 0.982312
Target:  5'- -gGACGUGGAcccggugcugGCGgCGCUcggccgGCGCGg -3'
miRNA:   3'- gaUUGUACCU----------CGCgGCGAaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 71573 0.66 0.98928
Target:  5'- -cGGCAgcGAGCGCaC-CUUUUGCGCGc -3'
miRNA:   3'- gaUUGUacCUCGCG-GcGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 71862 0.67 0.987782
Target:  5'- -cAGCgGUGGaAGCgGCCGCgagcGCGCGg -3'
miRNA:   3'- gaUUG-UACC-UCG-CGGCGaaaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.