miRNA display CGI


Results 141 - 160 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 86420 0.66 0.991843
Target:  5'- ---uCGUGGAuuuguuggcgGCGCUGCgcg-GCGCGg -3'
miRNA:   3'- gauuGUACCU----------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 87405 0.68 0.975176
Target:  5'- uUGACAUuGAGUGCCuGUcg-UGCGCGg -3'
miRNA:   3'- gAUUGUAcCUCGCGG-CGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 87922 0.72 0.85661
Target:  5'- -gGGCGUGGGGCugggcgcgGCCGCgc--ACGCGg -3'
miRNA:   3'- gaUUGUACCUCG--------CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88273 0.68 0.969375
Target:  5'- -gGACGgggGGAGCGCUucgccuGCUgggccgACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGG------CGAaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88306 0.68 0.975176
Target:  5'- --cGCG-GGGGCgGUCGaCUUUUGCGCGc -3'
miRNA:   3'- gauUGUaCCUCG-CGGC-GAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88359 0.66 0.991843
Target:  5'- -gAACGaGGGGCG-CGCgg--GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCgGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88599 0.7 0.920102
Target:  5'- -cGACGUGGgcgGGCGCgCGCUccacuuugUGCGCGc -3'
miRNA:   3'- gaUUGUACC---UCGCG-GCGAaa------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89057 0.69 0.946331
Target:  5'- -cGGCAUGGcGCGCCGggUUUcggcgGCGCu -3'
miRNA:   3'- gaUUGUACCuCGCGGCgaAAA-----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 89089 0.66 0.993894
Target:  5'- --cACcgGGAGUaCCGCg--UGCGCa -3'
miRNA:   3'- gauUGuaCCUCGcGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 89579 0.72 0.864641
Target:  5'- -gGGCGUGGAGCgcgacgccGCCGCggugaACGCGc -3'
miRNA:   3'- gaUUGUACCUCG--------CGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89824 0.66 0.991843
Target:  5'- ---cCGUGGAGCGC-GCggccaacGCGCGa -3'
miRNA:   3'- gauuGUACCUCGCGgCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89878 0.67 0.983923
Target:  5'- aUGGCuuuUGGGGCGCCuucggggACGCGg -3'
miRNA:   3'- gAUUGu--ACCUCGCGGcgaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90701 0.67 0.982312
Target:  5'- --cGCGUGccgcGCGCCGCgcccccgUGCGCGa -3'
miRNA:   3'- gauUGUACcu--CGCGGCGaaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90766 0.7 0.920102
Target:  5'- -gAGCG-GGAGCGCC-CUUgagGCGCa -3'
miRNA:   3'- gaUUGUaCCUCGCGGcGAAaa-UGCGc -5'
6362 5' -50.3 NC_001847.1 + 92813 0.71 0.911577
Target:  5'- -cGGC-UGGAGCGCCGCUaccuccaaaGCGa -3'
miRNA:   3'- gaUUGuACCUCGCGGCGAaaaug----CGC- -5'
6362 5' -50.3 NC_001847.1 + 95646 0.7 0.91951
Target:  5'- uCUGGCGcggGGGGCggcgcggGCCGCUcugGCGCGg -3'
miRNA:   3'- -GAUUGUa--CCUCG-------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 95700 0.7 0.91951
Target:  5'- uCUGGCGcggGGGGCggcgcggGCCGCUcugGCGCGg -3'
miRNA:   3'- -GAUUGUa--CCUCG-------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 95754 0.7 0.91951
Target:  5'- uCUGGCGcggGGGGCggcgcggGCCGCUcugGCGCGg -3'
miRNA:   3'- -GAUUGUa--CCUCG-------CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 96349 0.66 0.991843
Target:  5'- gCUGGCGUGcGAcGCGCUGCcggcagggACGCu -3'
miRNA:   3'- -GAUUGUAC-CU-CGCGGCGaaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 98593 0.69 0.946331
Target:  5'- -----uUGGGGCGCCggcGCUUgggcgGCGCGg -3'
miRNA:   3'- gauuguACCUCGCGG---CGAAaa---UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.