miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 85845 0.67 0.987782
Target:  5'- --uGCGUcGAGCGCguCGCUg--GCGCGg -3'
miRNA:   3'- gauUGUAcCUCGCG--GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 85366 0.69 0.946331
Target:  5'- -gGGCGUGGcaAGCGUCGCca--GCGCGu -3'
miRNA:   3'- gaUUGUACC--UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 84695 0.7 0.925874
Target:  5'- gCUcACGUGGccguagaaGGCGCUGCcUUUGCGCc -3'
miRNA:   3'- -GAuUGUACC--------UCGCGGCGaAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 84123 0.66 0.993894
Target:  5'- --cGCAgccaGAGCGCCGCgaaagcugGCGUGg -3'
miRNA:   3'- gauUGUac--CUCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 83020 0.7 0.931383
Target:  5'- --cGC-UGGGGCGCCGCcggccCGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 82100 0.66 0.991843
Target:  5'- --cGCcgGaGGGCGCCuGCgUUUGCGCc -3'
miRNA:   3'- gauUGuaC-CUCGCGG-CGaAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 80201 0.68 0.977755
Target:  5'- -gGGCG-GGuGCGCCGCgaa-GCGCa -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 80139 0.71 0.914065
Target:  5'- --cGCAUGGAcuccaGCGCCGCcaugACGCu -3'
miRNA:   3'- gauUGUACCU-----CGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 78855 0.67 0.986129
Target:  5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3'
miRNA:   3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 78413 0.66 0.994751
Target:  5'- --uGCG-GGcGCGCUGCUg--GCGCGc -3'
miRNA:   3'- gauUGUaCCuCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 77811 0.67 0.986129
Target:  5'- -gGACGUGGcGCGgCGCgugccggccuUUUUGCGCc -3'
miRNA:   3'- gaUUGUACCuCGCgGCG----------AAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 77702 0.71 0.901207
Target:  5'- -cGGCGUGcGcGCGCgCGCUggUGCGCGc -3'
miRNA:   3'- gaUUGUAC-CuCGCG-GCGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 77602 0.66 0.990107
Target:  5'- -cGGCAcccguuucUGGcGGCGCCGCUgggcgaggacgGCGCGc -3'
miRNA:   3'- gaUUGU--------ACC-UCGCGGCGAaaa--------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 75923 0.66 0.992927
Target:  5'- -gAGCAcgcGGuGGCGCCGCcg-UGCGCc -3'
miRNA:   3'- gaUUGUa--CC-UCGCGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 75268 0.67 0.984308
Target:  5'- -cAACGcGGAG-GCCGCgc--GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCgCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 74472 0.71 0.901207
Target:  5'- -gGACGUGcuGUGCCGCgaggGCGCGg -3'
miRNA:   3'- gaUUGUACcuCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 74365 0.66 0.994751
Target:  5'- --cGCGUGGuGGCGCgCGCgguagagGCGCu -3'
miRNA:   3'- gauUGUACC-UCGCG-GCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 74175 0.72 0.864641
Target:  5'- -cGGCGUGGGGCccauGCCGCgcg-GCGCc -3'
miRNA:   3'- gaUUGUACCUCG----CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 72435 0.66 0.991843
Target:  5'- -cAACGcGGAacauGCGCaCGCUgg-ACGCGg -3'
miRNA:   3'- gaUUGUaCCU----CGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 72328 0.67 0.986129
Target:  5'- -gGACGcGGAcGCGCUGCUggUGCuGCa -3'
miRNA:   3'- gaUUGUaCCU-CGCGGCGAaaAUG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.