Results 81 - 100 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 71862 | 0.67 | 0.987782 |
Target: 5'- -cAGCgGUGGaAGCgGCCGCgagcGCGCGg -3' miRNA: 3'- gaUUG-UACC-UCG-CGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 71573 | 0.66 | 0.98928 |
Target: 5'- -cGGCAgcGAGCGCaC-CUUUUGCGCGc -3' miRNA: 3'- gaUUGUacCUCGCG-GcGAAAAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 71060 | 0.67 | 0.982312 |
Target: 5'- -gGACGUGGAcccggugcugGCGgCGCUcggccgGCGCGg -3' miRNA: 3'- gaUUGUACCU----------CGCgGCGAaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70705 | 0.7 | 0.931383 |
Target: 5'- -cGGCGgcgGGGGCGcCCGCggcgaGCGCGa -3' miRNA: 3'- gaUUGUa--CCUCGC-GGCGaaaa-UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70368 | 0.68 | 0.966139 |
Target: 5'- -gAGCGagGGGGCGCCGgg---GCGCGa -3' miRNA: 3'- gaUUGUa-CCUCGCGGCgaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70124 | 0.66 | 0.993894 |
Target: 5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3' miRNA: 3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70018 | 0.67 | 0.983132 |
Target: 5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3' miRNA: 3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 68905 | 0.66 | 0.992927 |
Target: 5'- -cGGCccGGAGagugcaGCC-CUUUUGCGCGc -3' miRNA: 3'- gaUUGuaCCUCg-----CGGcGAAAAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 68901 | 0.72 | 0.880004 |
Target: 5'- -cAGCAUGccGAGCGCCGCcgcgcugaggUUcgGCGCGg -3' miRNA: 3'- gaUUGUAC--CUCGCGGCG----------AAaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 68447 | 0.7 | 0.920102 |
Target: 5'- aUGGCGcgGGAGCGcCCGCUguggAgGCGa -3' miRNA: 3'- gAUUGUa-CCUCGC-GGCGAaaa-UgCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 67991 | 0.66 | 0.99063 |
Target: 5'- -cGGCuUGGGGCgGCCGgUaUUACGCc -3' miRNA: 3'- gaUUGuACCUCG-CGGCgAaAAUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 67661 | 0.67 | 0.986129 |
Target: 5'- ------aGGGGCGCgGCg---GCGCGg -3' miRNA: 3'- gauuguaCCUCGCGgCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 67267 | 0.76 | 0.682496 |
Target: 5'- --uACGUGGGGUGCCGCcgUUcccaGCGCGu -3' miRNA: 3'- gauUGUACCUCGCGGCGaaAA----UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 65879 | 0.76 | 0.693125 |
Target: 5'- gCUGACGUGGGG-GCCGCccaUGCGCc -3' miRNA: 3'- -GAUUGUACCUCgCGGCGaaaAUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 65751 | 0.66 | 0.992927 |
Target: 5'- -gAGCGUGGuGGC-CCGCgg--GCGCa -3' miRNA: 3'- gaUUGUACC-UCGcGGCGaaaaUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 65234 | 0.71 | 0.907766 |
Target: 5'- uUAACG-GGGGCGgCGCUUUUcCGCc -3' miRNA: 3'- gAUUGUaCCUCGCgGCGAAAAuGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 64851 | 0.66 | 0.991373 |
Target: 5'- -cAGCGcGGcGCGCCGCgacccgccagGCGCGc -3' miRNA: 3'- gaUUGUaCCuCGCGGCGaaaa------UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 64149 | 0.67 | 0.982312 |
Target: 5'- -gGACAUGcGGCccgccaugcagGCCGCU--UGCGCGg -3' miRNA: 3'- gaUUGUACcUCG-----------CGGCGAaaAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 63411 | 0.68 | 0.975176 |
Target: 5'- cCUcGCAcgGGAGCGCaCGCg---GCGCc -3' miRNA: 3'- -GAuUGUa-CCUCGCG-GCGaaaaUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 63201 | 0.74 | 0.765358 |
Target: 5'- -cGACGUGcGGCGCgGCgccgUUUACGCGu -3' miRNA: 3'- gaUUGUACcUCGCGgCGa---AAAUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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