miRNA display CGI


Results 61 - 80 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 85366 0.69 0.946331
Target:  5'- -gGGCGUGGcaAGCGUCGCca--GCGCGu -3'
miRNA:   3'- gaUUGUACC--UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 103365 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 22167 0.74 0.784011
Target:  5'- -cGugGUGGAcacgaucGCGCCGCgaaUGCGCGg -3'
miRNA:   3'- gaUugUACCU-------CGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12628 0.73 0.822319
Target:  5'- -cAACAUGGAgGCgGCCGCUgcgGCuGCGg -3'
miRNA:   3'- gaUUGUACCU-CG-CGGCGAaaaUG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 102617 0.72 0.85661
Target:  5'- -cAACAgaccGGGCGCCGCUauaUACGCGc -3'
miRNA:   3'- gaUUGUac--CUCGCGGCGAaa-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56048 0.71 0.887322
Target:  5'- -cGACGaccccUGGgaGGCGCCGCUgaagccUGCGCGg -3'
miRNA:   3'- gaUUGU-----ACC--UCGCGGCGAaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 65234 0.71 0.907766
Target:  5'- uUAACG-GGGGCGgCGCUUUUcCGCc -3'
miRNA:   3'- gAUUGUaCCUCGCgGCGAAAAuGCGc -5'
6362 5' -50.3 NC_001847.1 + 43703 0.71 0.914065
Target:  5'- aCUGGCGUGcuuuGCGCgCGCUgc-GCGCGg -3'
miRNA:   3'- -GAUUGUACcu--CGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 84695 0.7 0.925874
Target:  5'- gCUcACGUGGccguagaaGGCGCUGCcUUUGCGCc -3'
miRNA:   3'- -GAuUGUACC--------UCGCGGCGaAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 12082 0.7 0.931383
Target:  5'- ------cGGAGCGCCGCggguccgGCGCc -3'
miRNA:   3'- gauuguaCCUCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 85845 0.67 0.987782
Target:  5'- --uGCGUcGAGCGCguCGCUg--GCGCGg -3'
miRNA:   3'- gauUGUAcCUCGCG--GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 1098 0.67 0.987782
Target:  5'- gUGACucUGGAGaCGCCGCg--UGCcccuGCGa -3'
miRNA:   3'- gAUUGu-ACCUC-GCGGCGaaaAUG----CGC- -5'
6362 5' -50.3 NC_001847.1 + 10854 0.69 0.962668
Target:  5'- --cGCGUGGccgaGGCGCgGCgg--GCGCGg -3'
miRNA:   3'- gauUGUACC----UCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32879 0.68 0.966139
Target:  5'- cCUGGCGcUGGAgggcacggugcGCGCCGC----GCGCGa -3'
miRNA:   3'- -GAUUGU-ACCU-----------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32660 0.68 0.975176
Target:  5'- -cGAgGUGGAcgGCGCCGgCg---GCGCGg -3'
miRNA:   3'- gaUUgUACCU--CGCGGC-GaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 80201 0.68 0.977755
Target:  5'- -gGGCG-GGuGCGCCGCgaa-GCGCa -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 64149 0.67 0.982312
Target:  5'- -gGACAUGcGGCccgccaugcagGCCGCU--UGCGCGg -3'
miRNA:   3'- gaUUGUACcUCG-----------CGGCGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89878 0.67 0.983923
Target:  5'- aUGGCuuuUGGGGCGCCuucggggACGCGg -3'
miRNA:   3'- gAUUGu--ACCUCGCGGcgaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120837 0.67 0.986129
Target:  5'- -gAGCAgcgGGAGCgggGCCGCg---ACGCc -3'
miRNA:   3'- gaUUGUa--CCUCG---CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 72328 0.67 0.986129
Target:  5'- -gGACGcGGAcGCGCUGCUggUGCuGCa -3'
miRNA:   3'- gaUUGUaCCU-CGCGGCGAaaAUG-CGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.