miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 70018 0.67 0.983132
Target:  5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3'
miRNA:   3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106128 0.67 0.984308
Target:  5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 29379 0.67 0.984308
Target:  5'- -cGGCGgccGGAGCuGCCGC----GCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCG-CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120837 0.67 0.986129
Target:  5'- -gAGCAgcgGGAGCgggGCCGCg---ACGCc -3'
miRNA:   3'- gaUUGUa--CCUCG---CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 67661 0.67 0.986129
Target:  5'- ------aGGGGCGCgGCg---GCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 126083 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 1098 0.67 0.987782
Target:  5'- gUGACucUGGAGaCGCCGCg--UGCcccuGCGa -3'
miRNA:   3'- gAUUGu-ACCUC-GCGGCGaaaAUG----CGC- -5'
6362 5' -50.3 NC_001847.1 + 88306 0.68 0.975176
Target:  5'- --cGCG-GGGGCgGUCGaCUUUUGCGCGc -3'
miRNA:   3'- gauUGUaCCUCG-CGGC-GAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102660 0.68 0.969375
Target:  5'- --cGCcgGGAGCgGCCGCgaggGCGgGg -3'
miRNA:   3'- gauUGuaCCUCG-CGGCGaaaaUGCgC- -5'
6362 5' -50.3 NC_001847.1 + 70368 0.68 0.966139
Target:  5'- -gAGCGagGGGGCGCCGgg---GCGCGa -3'
miRNA:   3'- gaUUGUa-CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 71573 0.66 0.98928
Target:  5'- -cGGCAgcGAGCGCaC-CUUUUGCGCGc -3'
miRNA:   3'- gaUUGUacCUCGCG-GcGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 57685 0.66 0.99063
Target:  5'- -gGugGUGcuGGGCGCCGCgggUGcCGCGc -3'
miRNA:   3'- gaUugUAC--CUCGCGGCGaaaAU-GCGC- -5'
6362 5' -50.3 NC_001847.1 + 15462 0.66 0.991843
Target:  5'- -aAGCGUGGcGGCGCacggCGCgcagACGCGc -3'
miRNA:   3'- gaUUGUACC-UCGCG----GCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 105027 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 82100 0.66 0.991843
Target:  5'- --cGCcgGaGGGCGCCuGCgUUUGCGCc -3'
miRNA:   3'- gauUGuaC-CUCGCGG-CGaAAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 112979 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43548 0.7 0.925874
Target:  5'- -cAACAc--GGCGCCGCggUUUGCGCGc -3'
miRNA:   3'- gaUUGUaccUCGCGGCGa-AAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 39589 0.7 0.936628
Target:  5'- ----gGUGGccccAGCGCUGCUgcgGCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 85366 0.69 0.946331
Target:  5'- -gGGCGUGGcaAGCGUCGCca--GCGCGu -3'
miRNA:   3'- gaUUGUACC--UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 36793 0.69 0.962668
Target:  5'- -gGACuuUGGGGCguuuuGCCGCUUcgUGCGCc -3'
miRNA:   3'- gaUUGu-ACCUCG-----CGGCGAAa-AUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.