miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 19214 0.66 0.993616
Target:  5'- -aGACGgcGAGUGCCGCUgcgacagccagcgccUGCGCGa -3'
miRNA:   3'- gaUUGUacCUCGCGGCGAaa-------------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 60872 0.66 0.994421
Target:  5'- -cAGCGcGGGGCgGCCGCgcccgggaagagUUGCGUGa -3'
miRNA:   3'- gaUUGUaCCUCG-CGGCGaa----------AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11347 0.66 0.99467
Target:  5'- -gAGCG-GGAGCacucguacgcgcgGCCGCgcg-GCGCGa -3'
miRNA:   3'- gaUUGUaCCUCG-------------CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 61318 0.66 0.994751
Target:  5'- -cGGCA-GGAcgcGCaGCCGCUgcaGCGCGg -3'
miRNA:   3'- gaUUGUaCCU---CG-CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19325 0.66 0.994751
Target:  5'- ---cCGUGGcuguuaacgcaAGCGCCGCggccgggucUUGCGCGc -3'
miRNA:   3'- gauuGUACC-----------UCGCGGCGaa-------AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 57685 0.66 0.99063
Target:  5'- -gGugGUGcuGGGCGCCGCgggUGcCGCGc -3'
miRNA:   3'- gaUugUAC--CUCGCGGCGaaaAU-GCGC- -5'
6362 5' -50.3 NC_001847.1 + 77602 0.66 0.990107
Target:  5'- -cGGCAcccguuucUGGcGGCGCCGCUgggcgaggacgGCGCGc -3'
miRNA:   3'- gaUUGU--------ACC-UCGCGGCGAaaa--------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32879 0.68 0.966139
Target:  5'- cCUGGCGcUGGAgggcacggugcGCGCCGC----GCGCGa -3'
miRNA:   3'- -GAUUGU-ACCU-----------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43235 0.68 0.972385
Target:  5'- gUGGCGgugGGGGCG-CGCgggcgGCGCGg -3'
miRNA:   3'- gAUUGUa--CCUCGCgGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32271 0.68 0.977755
Target:  5'- --uGCGUGGcucGCGCCGUccgcgugGCGCGg -3'
miRNA:   3'- gauUGUACCu--CGCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34279 0.67 0.980131
Target:  5'- -cGGCGgcUGG-GCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGU--ACCuCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70018 0.67 0.983132
Target:  5'- --uACAUGGugaagcggauuaaccGGCGCuCGCUga-GCGCGg -3'
miRNA:   3'- gauUGUACC---------------UCGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106128 0.67 0.984308
Target:  5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 67661 0.67 0.986129
Target:  5'- ------aGGGGCGCgGCg---GCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 104724 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 85845 0.67 0.987782
Target:  5'- --uGCGUcGAGCGCguCGCUg--GCGCGg -3'
miRNA:   3'- gauUGUAcCUCGCG--GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 39758 0.66 0.988992
Target:  5'- gCUGACuuUGGAGCGUCGggcauguaugUUGCGCc -3'
miRNA:   3'- -GAUUGu-ACCUCGCGGCgaa-------AAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 34684 0.66 0.98928
Target:  5'- -cGGCAggaGGAGCGCuggCGCgaggacUUGCGCGc -3'
miRNA:   3'- gaUUGUa--CCUCGCG---GCGaa----AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53268 0.66 0.98928
Target:  5'- ------cGGGGCGCUGCgcgcccagGCGCGc -3'
miRNA:   3'- gauuguaCCUCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 99449 0.66 0.98928
Target:  5'- -cAGCGUGGGaguugcgcagcGCGCCGCUcggggccaagaUcaGCGCGa -3'
miRNA:   3'- gaUUGUACCU-----------CGCGGCGA-----------AaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.