miRNA display CGI


Results 121 - 140 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 68905 0.66 0.992927
Target:  5'- -cGGCccGGAGagugcaGCC-CUUUUGCGCGc -3'
miRNA:   3'- gaUUGuaCCUCg-----CGGcGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88599 0.7 0.920102
Target:  5'- -cGACGUGGgcgGGCGCgCGCUccacuuugUGCGCGc -3'
miRNA:   3'- gaUUGUACC---UCGCG-GCGAaa------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90766 0.7 0.920102
Target:  5'- -gAGCG-GGAGCGCC-CUUgagGCGCa -3'
miRNA:   3'- gaUUGUaCCUCGCGGcGAAaa-UGCGc -5'
6362 5' -50.3 NC_001847.1 + 3949 0.67 0.986129
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 3259 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53832 0.66 0.99371
Target:  5'- -gAGCG-GGGGCGCUGaagagccgGCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGGCgaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 68447 0.7 0.920102
Target:  5'- aUGGCGcgGGAGCGcCCGCUguggAgGCGa -3'
miRNA:   3'- gAUUGUa-CCUCGC-GGCGAaaa-UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 27408 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 2214 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102744 0.67 0.986129
Target:  5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3'
miRNA:   3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 78855 0.67 0.986129
Target:  5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3'
miRNA:   3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56532 0.69 0.946331
Target:  5'- -gGACGUGGaAGUGCCGCg---GCgGCa -3'
miRNA:   3'- gaUUGUACC-UCGCGGCGaaaaUG-CGc -5'
6362 5' -50.3 NC_001847.1 + 552 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 89057 0.69 0.946331
Target:  5'- -cGGCAUGGcGCGCCGggUUUcggcgGCGCu -3'
miRNA:   3'- gaUUGUACCuCGCGGCgaAAA-----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 49802 0.67 0.984308
Target:  5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3'
miRNA:   3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29329 0.69 0.945407
Target:  5'- -cGACgcgGUGGAGCGCgCGCggcuccagcGCGCGg -3'
miRNA:   3'- gaUUG---UACCUCGCG-GCGaaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70705 0.7 0.931383
Target:  5'- -cGGCGgcgGGGGCGcCCGCggcgaGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGC-GGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120679 0.7 0.925874
Target:  5'- -cGGCGuUGGAGCGCaCGCcgagcaGCGCGg -3'
miRNA:   3'- gaUUGU-ACCUCGCG-GCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 101902 0.7 0.925874
Target:  5'- -cGGCAgcGGAgGCGCCGCggcgcccgGCGCGg -3'
miRNA:   3'- gaUUGUa-CCU-CGCGGCGaaaa----UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.