miRNA display CGI


Results 141 - 160 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 68447 0.7 0.920102
Target:  5'- aUGGCGcgGGAGCGcCCGCUguggAgGCGa -3'
miRNA:   3'- gAUUGUa-CCUCGC-GGCGAaaa-UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 56532 0.69 0.946331
Target:  5'- -gGACGUGGaAGUGCCGCg---GCgGCa -3'
miRNA:   3'- gaUUGUACC-UCGCGGCGaaaaUG-CGc -5'
6362 5' -50.3 NC_001847.1 + 552 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 89057 0.69 0.946331
Target:  5'- -cGGCAUGGcGCGCCGggUUUcggcgGCGCu -3'
miRNA:   3'- gaUUGUACCuCGCGGCgaAAA-----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 29329 0.69 0.945407
Target:  5'- -cGACgcgGUGGAGCGCgCGCggcuccagcGCGCGg -3'
miRNA:   3'- gaUUG---UACCUCGCG-GCGaaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70705 0.7 0.931383
Target:  5'- -cGGCGgcgGGGGCGcCCGCggcgaGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGC-GGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120679 0.7 0.925874
Target:  5'- -cGGCGuUGGAGCGCaCGCcgagcaGCGCGg -3'
miRNA:   3'- gaUUGU-ACCUCGCG-GCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88273 0.68 0.969375
Target:  5'- -gGACGgggGGAGCGCUucgccuGCUgggccgACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGG------CGAaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132698 0.68 0.972385
Target:  5'- -cGAUcgGGAGCucGCUGCggcugGCGCGa -3'
miRNA:   3'- gaUUGuaCCUCG--CGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102744 0.67 0.986129
Target:  5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3'
miRNA:   3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 78855 0.67 0.986129
Target:  5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3'
miRNA:   3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49802 0.67 0.984308
Target:  5'- ---cCcgGGuGCGCUGCUgcuggGCGCGc -3'
miRNA:   3'- gauuGuaCCuCGCGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3259 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 10166 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 90766 0.7 0.920102
Target:  5'- -gAGCG-GGAGCGCC-CUUgagGCGCa -3'
miRNA:   3'- gaUUGUaCCUCGCGGcGAAaa-UGCGc -5'
6362 5' -50.3 NC_001847.1 + 88599 0.7 0.920102
Target:  5'- -cGACGUGGgcgGGCGCgCGCUccacuuugUGCGCGc -3'
miRNA:   3'- gaUUGUACC---UCGCG-GCGAaa------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 87405 0.68 0.975176
Target:  5'- uUGACAUuGAGUGCCuGUcg-UGCGCGg -3'
miRNA:   3'- gAUUGUAcCUCGCGG-CGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 36977 0.68 0.975176
Target:  5'- -gGAC-UGGGcGCGCCGCg---GCGUGc -3'
miRNA:   3'- gaUUGuACCU-CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 35921 0.68 0.975176
Target:  5'- -cGGCAUGGAccggcggucGCGCgCGCU--UGCGCc -3'
miRNA:   3'- gaUUGUACCU---------CGCG-GCGAaaAUGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.