Results 41 - 60 of 200 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 61262 | 0.66 | 0.993894 |
Target: 5'- --uGCGcGGGGCGCCGgCggaacugACGCGc -3' miRNA: 3'- gauUGUaCCUCGCGGC-Gaaaa---UGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 28835 | 0.66 | 0.993894 |
Target: 5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3' miRNA: 3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 70124 | 0.66 | 0.993894 |
Target: 5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3' miRNA: 3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 84123 | 0.66 | 0.993894 |
Target: 5'- --cGCAgccaGAGCGCCGCgaaagcugGCGUGg -3' miRNA: 3'- gauUGUac--CUCGCGGCGaaaa----UGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 116680 | 0.66 | 0.994751 |
Target: 5'- ----uGUGGguccGGCGCUGCgg--GCGCGg -3' miRNA: 3'- gauugUACC----UCGCGGCGaaaaUGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 2214 | 0.66 | 0.991843 |
Target: 5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3' miRNA: 3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 64851 | 0.66 | 0.991373 |
Target: 5'- -cAGCGcGGcGCGCCGCgacccgccagGCGCGc -3' miRNA: 3'- gaUUGUaCCuCGCGGCGaaaa------UGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 102744 | 0.67 | 0.986129 |
Target: 5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3' miRNA: 3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 1911 | 0.67 | 0.986129 |
Target: 5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3' miRNA: 3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 3949 | 0.67 | 0.986129 |
Target: 5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3' miRNA: 3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 23270 | 0.67 | 0.987782 |
Target: 5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3' miRNA: 3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 29998 | 0.67 | 0.987782 |
Target: 5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3' miRNA: 3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 32322 | 0.67 | 0.987782 |
Target: 5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3' miRNA: 3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 71862 | 0.67 | 0.987782 |
Target: 5'- -cAGCgGUGGaAGCgGCCGCgagcGCGCGg -3' miRNA: 3'- gaUUG-UACC-UCG-CGGCGaaaaUGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 29629 | 0.66 | 0.989137 |
Target: 5'- -gGACAUgagggccGGGGCGCCGCgg--GCGg- -3' miRNA: 3'- gaUUGUA-------CCUCGCGGCGaaaaUGCgc -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 29566 | 0.66 | 0.98928 |
Target: 5'- -cGGCG-GGGGCGCCGgCgccgGCGCc -3' miRNA: 3'- gaUUGUaCCUCGCGGC-GaaaaUGCGc -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 43120 | 0.66 | 0.98928 |
Target: 5'- aUGACGUGGAGCG--GCUcu--CGCGg -3' miRNA: 3'- gAUUGUACCUCGCggCGAaaauGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 48077 | 0.66 | 0.98928 |
Target: 5'- -aGGCG-GGGGCGCaCGCc---GCGCGg -3' miRNA: 3'- gaUUGUaCCUCGCG-GCGaaaaUGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 49502 | 0.66 | 0.99063 |
Target: 5'- cCUGAUc---GGCGCCGCUUcgccggGCGCGg -3' miRNA: 3'- -GAUUGuaccUCGCGGCGAAaa----UGCGC- -5' |
|||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 67991 | 0.66 | 0.99063 |
Target: 5'- -cGGCuUGGGGCgGCCGgUaUUACGCc -3' miRNA: 3'- gaUUGuACCUCG-CGGCgAaAAUGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home