Results 81 - 100 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 30476 | 0.66 | 0.888472 |
Target: 5'- gCGCCGAcucgcacgccuGGGCcgg-GCGCUggacgGGCGCg -3' miRNA: 3'- gGUGGCU-----------CCCGcacaUGUGAa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 75916 | 0.67 | 0.84387 |
Target: 5'- aUCGCCGAcGGccgacGCGUGcaaGCGCacGGCGCg -3' miRNA: 3'- -GGUGGCU-CC-----CGCACa--UGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 79547 | 0.67 | 0.874452 |
Target: 5'- -gGCCGGGGGgGcUGgggcuCGCggggGGCGCc -3' miRNA: 3'- ggUGGCUCCCgC-ACau---GUGaa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 95178 | 0.67 | 0.874452 |
Target: 5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3' miRNA: 3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 95226 | 0.67 | 0.874452 |
Target: 5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3' miRNA: 3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 118158 | 0.67 | 0.874452 |
Target: 5'- uCC-CCGAgGGGCGcGUcucccuGCGCUggacGGUGCg -3' miRNA: 3'- -GGuGGCU-CCCGCaCA------UGUGAa---CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 115704 | 0.67 | 0.874452 |
Target: 5'- -aGCCGGcuGcGGCccGUGUGCGCUUgccgccacgGGCGCg -3' miRNA: 3'- ggUGGCU--C-CCG--CACAUGUGAA---------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 2303 | 0.67 | 0.867116 |
Target: 5'- gCCGCCGGGcGGCaUGggccccaGCACgcgGGCGg -3' miRNA: 3'- -GGUGGCUC-CCGcACa------UGUGaa-CCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 99625 | 0.67 | 0.867116 |
Target: 5'- cUCGCCGAGGa----UGCGCUcGGCGCg -3' miRNA: 3'- -GGUGGCUCCcgcacAUGUGAaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 61296 | 0.67 | 0.867116 |
Target: 5'- gCACCGcGGcGGCGUuuuuaugcgcggGUGCGCggGGCGg -3' miRNA: 3'- gGUGGC-UC-CCGCA------------CAUGUGaaCCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 46610 | 0.67 | 0.847073 |
Target: 5'- gCCACgcgcacacacguuuaCGAGGGCGa----ACUUGGCGUc -3' miRNA: 3'- -GGUG---------------GCUCCCGCacaugUGAACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 102125 | 0.67 | 0.851819 |
Target: 5'- gCGgaGAGGGCGgcgGCACUccGCGCg -3' miRNA: 3'- gGUggCUCCCGCacaUGUGAacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 70224 | 0.67 | 0.857266 |
Target: 5'- cCCGCCGGcguuGGUGUG-ACGCgcggggcgggcggcgGGCGCg -3' miRNA: 3'- -GGUGGCUc---CCGCACaUGUGaa-------------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 113485 | 0.67 | 0.881572 |
Target: 5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3' miRNA: 3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 104783 | 0.67 | 0.858035 |
Target: 5'- gCGCCGAGGGCccgccagcaACGCgcGGUGCu -3' miRNA: 3'- gGUGGCUCCCGcaca-----UGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 69333 | 0.67 | 0.881572 |
Target: 5'- -gGCCucGGGCGcugcUGgcgGCGCUggugcUGGCGCg -3' miRNA: 3'- ggUGGcuCCCGC----ACa--UGUGA-----ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 8474 | 0.67 | 0.859569 |
Target: 5'- -gGCCGGGGGCG---GCGCUcggccgGGgGCg -3' miRNA: 3'- ggUGGCUCCCGCacaUGUGAa-----CCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 77249 | 0.67 | 0.859569 |
Target: 5'- cUCGCCcGGGGCGguUGCGCcccgGGCGUc -3' miRNA: 3'- -GGUGGcUCCCGCacAUGUGaa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 74123 | 0.67 | 0.84387 |
Target: 5'- gCGCCcGGGGaUGUG-ACGCgcGGCGCc -3' miRNA: 3'- gGUGGcUCCC-GCACaUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 119103 | 0.67 | 0.859569 |
Target: 5'- gCCGCCGcGGGGCGgcggGgcagGCAUggGGcCGUc -3' miRNA: 3'- -GGUGGC-UCCCGCa---Ca---UGUGaaCC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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