miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 79547 0.67 0.874452
Target:  5'- -gGCCGGGGGgGcUGgggcuCGCggggGGCGCc -3'
miRNA:   3'- ggUGGCUCCCgC-ACau---GUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95178 0.67 0.874452
Target:  5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3'
miRNA:   3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95226 0.67 0.874452
Target:  5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3'
miRNA:   3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 118158 0.67 0.874452
Target:  5'- uCC-CCGAgGGGCGcGUcucccuGCGCUggacGGUGCg -3'
miRNA:   3'- -GGuGGCU-CCCGCaCA------UGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 36189 0.67 0.877326
Target:  5'- aCGCCGuGGcGCGUGggcuCGCUgaagauauaaggcgGGUGCu -3'
miRNA:   3'- gGUGGCuCC-CGCACau--GUGAa-------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 98861 0.67 0.88087
Target:  5'- aCCAgcagaucCCGgaAGGGCGcGUGCGCcugGGCGg -3'
miRNA:   3'- -GGU-------GGC--UCCCGCaCAUGUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 1634 0.67 0.881572
Target:  5'- gCACCGcGGcGCGcagGUACACgu-GCGCc -3'
miRNA:   3'- gGUGGCuCC-CGCa--CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 119103 0.67 0.859569
Target:  5'- gCCGCCGcGGGGCGgcggGgcagGCAUggGGcCGUc -3'
miRNA:   3'- -GGUGGC-UCCCGCa---Ca---UGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 79429 0.67 0.859569
Target:  5'- gCGcCCGAGGGCGgcggGcACACgaagaaGCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCa---CaUGUGaac---CGCG- -5'
6363 3' -55.9 NC_001847.1 + 77249 0.67 0.859569
Target:  5'- cUCGCCcGGGGCGguUGCGCcccgGGCGUc -3'
miRNA:   3'- -GGUGGcUCCCGCacAUGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66330 0.67 0.851819
Target:  5'- cCCugCGGcGGGUGgg-GCGCg-GGCGCc -3'
miRNA:   3'- -GGugGCU-CCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99322 0.67 0.856493
Target:  5'- cCCGCCGGGGGCcgaagcuaaaggGUGgGCggccgGGCGg -3'
miRNA:   3'- -GGUGGCUCCCGca----------CAUgUGaa---CCGCg -5'
6363 3' -55.9 NC_001847.1 + 115704 0.67 0.874452
Target:  5'- -aGCCGGcuGcGGCccGUGUGCGCUUgccgccacgGGCGCg -3'
miRNA:   3'- ggUGGCU--C-CCG--CACAUGUGAA---------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74123 0.67 0.84387
Target:  5'- gCGCCcGGGGaUGUG-ACGCgcGGCGCc -3'
miRNA:   3'- gGUGGcUCCC-GCACaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 75916 0.67 0.84387
Target:  5'- aUCGCCGAcGGccgacGCGUGcaaGCGCacGGCGCg -3'
miRNA:   3'- -GGUGGCU-CC-----CGCACa--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 46610 0.67 0.847073
Target:  5'- gCCACgcgcacacacguuuaCGAGGGCGa----ACUUGGCGUc -3'
miRNA:   3'- -GGUG---------------GCUCCCGCacaugUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102125 0.67 0.851819
Target:  5'- gCGgaGAGGGCGgcgGCACUccGCGCg -3'
miRNA:   3'- gGUggCUCCCGCacaUGUGAacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 70224 0.67 0.857266
Target:  5'- cCCGCCGGcguuGGUGUG-ACGCgcggggcgggcggcgGGCGCg -3'
miRNA:   3'- -GGUGGCUc---CCGCACaUGUGaa-------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 104783 0.67 0.858035
Target:  5'- gCGCCGAGGGCccgccagcaACGCgcGGUGCu -3'
miRNA:   3'- gGUGGCUCCCGcaca-----UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 8474 0.67 0.859569
Target:  5'- -gGCCGGGGGCG---GCGCUcggccgGGgGCg -3'
miRNA:   3'- ggUGGCUCCCGCacaUGUGAa-----CCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.