miRNA display CGI


Results 121 - 140 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 22291 0.67 0.881572
Target:  5'- gCCGCCGAGGcCGac-ACGCUgaUGGgGCu -3'
miRNA:   3'- -GGUGGCUCCcGCacaUGUGA--ACCgCG- -5'
6363 3' -55.9 NC_001847.1 + 53805 0.67 0.881572
Target:  5'- gCCGCaCGugcaaGGCGUGU-CGCg-GGCGCg -3'
miRNA:   3'- -GGUG-GCuc---CCGCACAuGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 69333 0.67 0.881572
Target:  5'- -gGCCucGGGCGcugcUGgcgGCGCUggugcUGGCGCg -3'
miRNA:   3'- ggUGGcuCCCGC----ACa--UGUGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 113485 0.67 0.881572
Target:  5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3'
miRNA:   3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 133130 0.67 0.881572
Target:  5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3'
miRNA:   3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 36008 0.67 0.859569
Target:  5'- gCgGCCGcGGGCGUGgu-GCUggGGCuGCg -3'
miRNA:   3'- -GgUGGCuCCCGCACaugUGAa-CCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 116068 0.67 0.881572
Target:  5'- gCACCG-GGGCGcacuuuCGCacGGCGCu -3'
miRNA:   3'- gGUGGCuCCCGCacau--GUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134518 0.67 0.881572
Target:  5'- gCgGCCGc-GGCGcauguggugGUACACggGGCGCg -3'
miRNA:   3'- -GgUGGCucCCGCa--------CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 10672 0.67 0.881572
Target:  5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3'
miRNA:   3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30317 0.67 0.881572
Target:  5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3'
miRNA:   3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102603 0.67 0.881572
Target:  5'- gCGCCGAGGGC---UGCGC---GCGCa -3'
miRNA:   3'- gGUGGCUCCCGcacAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 107666 0.67 0.881572
Target:  5'- gCCGCCGAagccGGCGUGcaguCAgUgacGGCGCc -3'
miRNA:   3'- -GGUGGCUc---CCGCACau--GUgAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77540 0.68 0.801406
Target:  5'- -aGCgCGAGGGCGUggcgcacccucGUGCGCUUuccgcGGcCGCg -3'
miRNA:   3'- ggUG-GCUCCCGCA-----------CAUGUGAA-----CC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 57660 0.68 0.801406
Target:  5'- gCGCCGucGGGCaggcgGUGgGCACggUGGUGCu -3'
miRNA:   3'- gGUGGCu-CCCG-----CACaUGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 37186 0.68 0.807604
Target:  5'- gCGCCGGGagagcccggugcgaGGCGcccgGUGcCGCUUGGCGg -3'
miRNA:   3'- gGUGGCUC--------------CCGCa---CAU-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 36396 0.68 0.801406
Target:  5'- gCGCCGc-GGCGacgGUGCACUcGcGCGCa -3'
miRNA:   3'- gGUGGCucCCGCa--CAUGUGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 103337 0.68 0.801406
Target:  5'- uCCGCgGAGGGCaaGUGcccgACGCggggaacgUGGCGg -3'
miRNA:   3'- -GGUGgCUCCCG--CACa---UGUGa-------ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 74337 0.68 0.801406
Target:  5'- gCUGCCGcAGGcGCGc--GCGCUggUGGCGCg -3'
miRNA:   3'- -GGUGGC-UCC-CGCacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85358 0.68 0.827407
Target:  5'- gCAcCCGGGGGCGUGgcaagcguCGCca-GCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCACau------GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 24511 0.68 0.801406
Target:  5'- aCGCCGuGGGCGUcgGgGCUcGcGCGCu -3'
miRNA:   3'- gGUGGCuCCCGCAcaUgUGAaC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.