miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 29390 0.7 0.716137
Target:  5'- gCCGCCGcgcuGGaGGCGgccGCGCUggcGGCGCg -3'
miRNA:   3'- -GGUGGC----UC-CCGCacaUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 80187 0.7 0.702185
Target:  5'- gCCGCCGccucugcGGGCGgGUGCGCcgcgaagcgcagGGCGCu -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAUGUGaa----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122560 0.7 0.705185
Target:  5'- gCCGCacgagugCGAGGGCGccgcGUACGC--GGCGCc -3'
miRNA:   3'- -GGUG-------GCUCCCGCa---CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 10859 0.7 0.716137
Target:  5'- -gGCCGAGGcGCGgcggGCGCg-GGCGCc -3'
miRNA:   3'- ggUGGCUCC-CGCaca-UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53258 0.7 0.73582
Target:  5'- gCCGCCucggcGGGGCGcUGcGCGCccaGGCGCg -3'
miRNA:   3'- -GGUGGc----UCCCGC-ACaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53713 0.7 0.716137
Target:  5'- gCCGCCGgcggcucgcGGGGCGgaucgGCGCgcGGCGUa -3'
miRNA:   3'- -GGUGGC---------UCCCGCaca--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 3981 0.7 0.716137
Target:  5'- gCGCCGGGGGCcggGcGCGCggccccgcggGGCGCc -3'
miRNA:   3'- gGUGGCUCCCGca-CaUGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102746 0.7 0.716137
Target:  5'- aCgGCCGAcgGGGCGUcGUGCcGCgUGcGCGCg -3'
miRNA:   3'- -GgUGGCU--CCCGCA-CAUG-UGaAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 84178 0.7 0.726018
Target:  5'- gCCGCCGAcuGGGCGUcGUGCGCca-GCaGCc -3'
miRNA:   3'- -GGUGGCU--CCCGCA-CAUGUGaacCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 52279 0.7 0.726018
Target:  5'- cCCGCgCGccGGCuuuGUGUGCGCgaccgcgGGCGCg -3'
miRNA:   3'- -GGUG-GCucCCG---CACAUGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 133923 0.7 0.73582
Target:  5'- gCCugCGGGcGGCGc--GCGCUggagcUGGCGCc -3'
miRNA:   3'- -GGugGCUC-CCGCacaUGUGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 43573 0.7 0.726018
Target:  5'- uUCGCCGcGGGCGac-GCGCgccccagcgUGGCGCu -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUGa--------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 38498 0.69 0.792424
Target:  5'- gUCGCCgGGGGGCGgcgcgGU-CGCc-GGCGCu -3'
miRNA:   3'- -GGUGG-CUCCCGCa----CAuGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134638 0.69 0.796034
Target:  5'- -gGCUGGGGGCGggccggcagcagGCGCggaGGCGCg -3'
miRNA:   3'- ggUGGCUCCCGCaca---------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 37059 0.69 0.745531
Target:  5'- -gGCUGGGGGCGgcugGUGCACgcgguacUGGCccGCc -3'
miRNA:   3'- ggUGGCUCCCGCa---CAUGUGa------ACCG--CG- -5'
6363 3' -55.9 NC_001847.1 + 101526 0.69 0.745531
Target:  5'- gCCGCCGcgcccgucgccAGGGCGUcca-GC-UGGCGCa -3'
miRNA:   3'- -GGUGGC-----------UCCCGCAcaugUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 28532 0.69 0.745531
Target:  5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3'
miRNA:   3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 67943 0.69 0.755143
Target:  5'- cCCGCCGcucGGcacGGCGUGUGCuACcUGcGCGCc -3'
miRNA:   3'- -GGUGGC---UC---CCGCACAUG-UGaAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 32796 0.69 0.745531
Target:  5'- -gGCCGGGGGCGgacgGCGCgUUGGaGCc -3'
miRNA:   3'- ggUGGCUCCCGCaca-UGUG-AACCgCG- -5'
6363 3' -55.9 NC_001847.1 + 88558 0.69 0.783297
Target:  5'- gCGCCGgcGGGGC-UG-ACGCccGGCGCg -3'
miRNA:   3'- gGUGGC--UCCCGcACaUGUGaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.