miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 37059 0.69 0.745531
Target:  5'- -gGCUGGGGGCGgcugGUGCACgcgguacUGGCccGCc -3'
miRNA:   3'- ggUGGCUCCCGCa---CAUGUGa------ACCG--CG- -5'
6363 3' -55.9 NC_001847.1 + 32796 0.69 0.745531
Target:  5'- -gGCCGGGGGCGgacgGCGCgUUGGaGCc -3'
miRNA:   3'- ggUGGCUCCCGCaca-UGUG-AACCgCG- -5'
6363 3' -55.9 NC_001847.1 + 73857 0.69 0.764648
Target:  5'- aCGCCGcc-GCG-GUGCGCggGGCGCg -3'
miRNA:   3'- gGUGGCuccCGCaCAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27808 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 32682 0.69 0.780532
Target:  5'- uCCGCCGguggcuggaGGGGCGcccgaccugcccgcUGUGCAa--GGCGCc -3'
miRNA:   3'- -GGUGGC---------UCCCGC--------------ACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 8626 0.69 0.745531
Target:  5'- cCCGCCGGGGGaGcGgcCGCUgcggacucgGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCgCaCauGUGAa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 131345 0.69 0.745531
Target:  5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3'
miRNA:   3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 98589 0.69 0.745531
Target:  5'- uCCAUUG-GGGCGccgGCGCUUgggcGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99772 0.69 0.755143
Target:  5'- gCCGCCGcggcuuuGGGCGgggGgcaGCGCcugUGGUGCg -3'
miRNA:   3'- -GGUGGCu------CCCGCa--Ca--UGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 61552 0.69 0.755143
Target:  5'- gCCGCCGGcaacGGCacgGUGCGCgaGGUGCa -3'
miRNA:   3'- -GGUGGCUc---CCGca-CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 34580 0.69 0.761809
Target:  5'- aCGCCGAccugcgcaaggcccGGGCGcugGCGCggcGGCGCg -3'
miRNA:   3'- gGUGGCU--------------CCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33341 0.69 0.764648
Target:  5'- gCgGCCuGGGuGGCGcUGcUGCACgaGGCGCa -3'
miRNA:   3'- -GgUGG-CUC-CCGC-AC-AUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78408 0.69 0.764648
Target:  5'- gCCGCUGcGGGC----GCGCUgcUGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGcacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 106793 0.69 0.764648
Target:  5'- gCGCCGGGGGCccggGcGCGCggccccgcggGGCGCc -3'
miRNA:   3'- gGUGGCUCCCGca--CaUGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134638 0.69 0.796034
Target:  5'- -gGCUGGGGGCGggccggcagcagGCGCggaGGCGCg -3'
miRNA:   3'- ggUGGCUCCCGCaca---------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 38498 0.69 0.792424
Target:  5'- gUCGCCgGGGGGCGgcgcgGU-CGCc-GGCGCu -3'
miRNA:   3'- -GGUGG-CUCCCGCa----CAuGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88558 0.69 0.783297
Target:  5'- gCGCCGgcGGGGC-UG-ACGCccGGCGCg -3'
miRNA:   3'- gGUGGC--UCCCGcACaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 42307 0.69 0.783297
Target:  5'- gUCACCggcgaaGAGGGCGaguguuucGUGCugUgGGCGCc -3'
miRNA:   3'- -GGUGG------CUCCCGCa-------CAUGugAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 116664 0.69 0.782377
Target:  5'- aCGCUGGuGGccuGCGUGUggguccgGCGCUgcgGGCGCg -3'
miRNA:   3'- gGUGGCU-CC---CGCACA-------UGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 81046 0.69 0.745531
Target:  5'- aCugCGGGGGCGacGUGgGCgugGGCGg -3'
miRNA:   3'- gGugGCUCCCGCa-CAUgUGaa-CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.