miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 27808 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 102992 0.69 0.764648
Target:  5'- aCGCCGucGcGGCGUGcgcggGCGCggcGGCGCc -3'
miRNA:   3'- gGUGGCu-C-CCGCACa----UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 89571 0.69 0.764648
Target:  5'- cCCGgCGAGGGCGUGgaGCGCgacGcCGCc -3'
miRNA:   3'- -GGUgGCUCCCGCACa-UGUGaacC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 67943 0.69 0.755143
Target:  5'- cCCGCCGcucGGcacGGCGUGUGCuACcUGcGCGCc -3'
miRNA:   3'- -GGUGGC---UC---CCGCACAUG-UGaAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 103348 0.69 0.758959
Target:  5'- cCCACCGccacggccguaaggcAGGcCGUGUugGCc-GGCGCg -3'
miRNA:   3'- -GGUGGC---------------UCCcGCACAugUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 92796 0.69 0.764648
Target:  5'- gCCACCGAGGaCGUGgcCgGCUgGaGCGCc -3'
miRNA:   3'- -GGUGGCUCCcGCACauG-UGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 109849 0.68 0.818906
Target:  5'- gUCGgCGAGGGCGc---CACgUGGUGCg -3'
miRNA:   3'- -GGUgGCUCCCGCacauGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 28887 0.68 0.810236
Target:  5'- gCGCUGuGGGCGcUGccGCACgUGGCGg -3'
miRNA:   3'- gGUGGCuCCCGC-ACa-UGUGaACCGCg -5'
6363 3' -55.9 NC_001847.1 + 64678 0.68 0.818906
Target:  5'- uCCACCGGGcgcccgcGCGUGUcGCAgUgcgucaGGCGCg -3'
miRNA:   3'- -GGUGGCUCc------CGCACA-UGUgAa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 93765 0.68 0.810236
Target:  5'- gCgGCUGAGcGaGCGUgacGUGCGCUcucGGCGCg -3'
miRNA:   3'- -GgUGGCUC-C-CGCA---CAUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 119223 0.68 0.827407
Target:  5'- gCCACCGcGGGGCGgcggGgcagGCAUggGGcCGUc -3'
miRNA:   3'- -GGUGGC-UCCCGCa---Ca---UGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 130739 0.68 0.801406
Target:  5'- gCCGCCGucGGCGUcgacGgcgGCGaccgUGGCGCc -3'
miRNA:   3'- -GGUGGCucCCGCA----Ca--UGUga--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74358 0.68 0.810236
Target:  5'- gCCACCaagguGGGC-UGcUGCGCcucgUGGCGCu -3'
miRNA:   3'- -GGUGGcu---CCCGcAC-AUGUGa---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59606 0.68 0.801406
Target:  5'- gCCGCCGAGaucGCGcgGUGCGCcguGCGCu -3'
miRNA:   3'- -GGUGGCUCc--CGCa-CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 524 0.68 0.801406
Target:  5'- uCCGCgGAGGGCaaGUGcccgACGCggggaacgUGGCGg -3'
miRNA:   3'- -GGUGgCUCCCG--CACa---UGUGa-------ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 105222 0.68 0.801406
Target:  5'- cCCAcCCGcGGGCGcGcggGCACaggcgGGCGCa -3'
miRNA:   3'- -GGU-GGCuCCCGCaCa--UGUGaa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 19945 0.68 0.798727
Target:  5'- gCCGCgCGAGGGCucgcccuuccacauGUGgguuUUUGGCGCc -3'
miRNA:   3'- -GGUG-GCUCCCG--------------CACauguGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88239 0.68 0.835731
Target:  5'- -aGCCGAGgccGGCGcg-GCGCggGGCGCc -3'
miRNA:   3'- ggUGGCUC---CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74337 0.68 0.801406
Target:  5'- gCUGCCGcAGGcGCGc--GCGCUggUGGCGCg -3'
miRNA:   3'- -GGUGGC-UCC-CGCacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74710 0.68 0.819764
Target:  5'- gCGCCGAcGcGcGCGUGgacgccgagccuucgGCGCUUGcGCGCg -3'
miRNA:   3'- gGUGGCU-C-C-CGCACa--------------UGUGAAC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.