Results 61 - 80 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 3981 | 0.7 | 0.716137 |
Target: 5'- gCGCCGGGGGCcggGcGCGCggccccgcggGGCGCc -3' miRNA: 3'- gGUGGCUCCCGca-CaUGUGaa--------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 10859 | 0.7 | 0.716137 |
Target: 5'- -gGCCGAGGcGCGgcggGCGCg-GGCGCc -3' miRNA: 3'- ggUGGCUCC-CGCaca-UGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 29390 | 0.7 | 0.716137 |
Target: 5'- gCCGCCGcgcuGGaGGCGgccGCGCUggcGGCGCg -3' miRNA: 3'- -GGUGGC----UC-CCGCacaUGUGAa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 26090 | 0.7 | 0.716137 |
Target: 5'- -uGCUGGGGGCGgaggGaGCAg-UGGCGCu -3' miRNA: 3'- ggUGGCUCCCGCa---CaUGUgaACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 52279 | 0.7 | 0.726018 |
Target: 5'- cCCGCgCGccGGCuuuGUGUGCGCgaccgcgGGCGCg -3' miRNA: 3'- -GGUG-GCucCCG---CACAUGUGaa-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 84178 | 0.7 | 0.726018 |
Target: 5'- gCCGCCGAcuGGGCGUcGUGCGCca-GCaGCc -3' miRNA: 3'- -GGUGGCU--CCCGCA-CAUGUGaacCG-CG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 43573 | 0.7 | 0.726018 |
Target: 5'- uUCGCCGcGGGCGac-GCGCgccccagcgUGGCGCu -3' miRNA: 3'- -GGUGGCuCCCGCacaUGUGa--------ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 53258 | 0.7 | 0.73582 |
Target: 5'- gCCGCCucggcGGGGCGcUGcGCGCccaGGCGCg -3' miRNA: 3'- -GGUGGc----UCCCGC-ACaUGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 83959 | 0.7 | 0.73582 |
Target: 5'- -gGCCGGGGGCGgagacGUguaccguaccGCGCgaaGGCGCc -3' miRNA: 3'- ggUGGCUCCCGCa----CA----------UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 133923 | 0.7 | 0.73582 |
Target: 5'- gCCugCGGGcGGCGc--GCGCUggagcUGGCGCc -3' miRNA: 3'- -GGugGCUC-CCGCacaUGUGA-----ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 120920 | 0.7 | 0.73582 |
Target: 5'- gCAUaCGAGGGCGgGgcggGCGCgcgGGCGUg -3' miRNA: 3'- gGUG-GCUCCCGCaCa---UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 31110 | 0.7 | 0.73582 |
Target: 5'- gCCugCGGGcGGCGc--GCGCUggagcUGGCGCc -3' miRNA: 3'- -GGugGCUC-CCGCacaUGUGA-----ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 46032 | 0.69 | 0.745531 |
Target: 5'- aCCACCG-GGGCG---GCGCUgccuucUGuGCGCa -3' miRNA: 3'- -GGUGGCuCCCGCacaUGUGA------AC-CGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 32796 | 0.69 | 0.745531 |
Target: 5'- -gGCCGGGGGCGgacgGCGCgUUGGaGCc -3' miRNA: 3'- ggUGGCUCCCGCaca-UGUG-AACCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 37059 | 0.69 | 0.745531 |
Target: 5'- -gGCUGGGGGCGgcugGUGCACgcgguacUGGCccGCc -3' miRNA: 3'- ggUGGCUCCCGCa---CAUGUGa------ACCG--CG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 101526 | 0.69 | 0.745531 |
Target: 5'- gCCGCCGcgcccgucgccAGGGCGUcca-GC-UGGCGCa -3' miRNA: 3'- -GGUGGC-----------UCCCGCAcaugUGaACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 28532 | 0.69 | 0.745531 |
Target: 5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3' miRNA: 3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 81046 | 0.69 | 0.745531 |
Target: 5'- aCugCGGGGGCGacGUGgGCgugGGCGg -3' miRNA: 3'- gGugGCUCCCGCa-CAUgUGaa-CCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 8626 | 0.69 | 0.745531 |
Target: 5'- cCCGCCGGGGGaGcGgcCGCUgcggacucgGGCGCc -3' miRNA: 3'- -GGUGGCUCCCgCaCauGUGAa--------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 131345 | 0.69 | 0.745531 |
Target: 5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3' miRNA: 3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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