miRNA display CGI


Results 81 - 100 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 98589 0.69 0.745531
Target:  5'- uCCAUUG-GGGCGccgGCGCUUgggcGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99772 0.69 0.755143
Target:  5'- gCCGCCGcggcuuuGGGCGgggGgcaGCGCcugUGGUGCg -3'
miRNA:   3'- -GGUGGCu------CCCGCa--Ca--UGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 67943 0.69 0.755143
Target:  5'- cCCGCCGcucGGcacGGCGUGUGCuACcUGcGCGCc -3'
miRNA:   3'- -GGUGGC---UC---CCGCACAUG-UGaAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 61552 0.69 0.755143
Target:  5'- gCCGCCGGcaacGGCacgGUGCGCgaGGUGCa -3'
miRNA:   3'- -GGUGGCUc---CCGca-CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 103348 0.69 0.758959
Target:  5'- cCCACCGccacggccguaaggcAGGcCGUGUugGCc-GGCGCg -3'
miRNA:   3'- -GGUGGC---------------UCCcGCACAugUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 34580 0.69 0.761809
Target:  5'- aCGCCGAccugcgcaaggcccGGGCGcugGCGCggcGGCGCg -3'
miRNA:   3'- gGUGGCU--------------CCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102992 0.69 0.764648
Target:  5'- aCGCCGucGcGGCGUGcgcggGCGCggcGGCGCc -3'
miRNA:   3'- gGUGGCu-C-CCGCACa----UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33341 0.69 0.764648
Target:  5'- gCgGCCuGGGuGGCGcUGcUGCACgaGGCGCa -3'
miRNA:   3'- -GgUGG-CUC-CCGC-AC-AUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78408 0.69 0.764648
Target:  5'- gCCGCUGcGGGC----GCGCUgcUGGCGCg -3'
miRNA:   3'- -GGUGGCuCCCGcacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 106793 0.69 0.764648
Target:  5'- gCGCCGGGGGCccggGcGCGCggccccgcggGGCGCc -3'
miRNA:   3'- gGUGGCUCCCGca--CaUGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77227 0.69 0.764648
Target:  5'- gCCGCCGGGcccggacuuGGCGcgGU-CGCgcgGGCGCu -3'
miRNA:   3'- -GGUGGCUC---------CCGCa-CAuGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 89571 0.69 0.764648
Target:  5'- cCCGgCGAGGGCGUGgaGCGCgacGcCGCc -3'
miRNA:   3'- -GGUgGCUCCCGCACa-UGUGaacC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 92796 0.69 0.764648
Target:  5'- gCCACCGAGGaCGUGgcCgGCUgGaGCGCc -3'
miRNA:   3'- -GGUGGCUCCcGCACauG-UGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 73857 0.69 0.764648
Target:  5'- aCGCCGcc-GCG-GUGCGCggGGCGCg -3'
miRNA:   3'- gGUGGCuccCGCaCAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 130621 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 27808 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 13047 0.69 0.771232
Target:  5'- cCCACUGAGgcgcugcucuuuuuGGCGUGacGCGCUgcuGCGCg -3'
miRNA:   3'- -GGUGGCUC--------------CCGCACa-UGUGAac-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 51066 0.69 0.774036
Target:  5'- gCCACCGA-GGCGUucGUGCGCg-GGCu- -3'
miRNA:   3'- -GGUGGCUcCCGCA--CAUGUGaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 32682 0.69 0.780532
Target:  5'- uCCGCCGguggcuggaGGGGCGcccgaccugcccgcUGUGCAa--GGCGCc -3'
miRNA:   3'- -GGUGGC---------UCCCGC--------------ACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 116664 0.69 0.782377
Target:  5'- aCGCUGGuGGccuGCGUGUggguccgGCGCUgcgGGCGCg -3'
miRNA:   3'- gGUGGCU-CC---CGCACA-------UGUGAa--CCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.