miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 42307 0.69 0.783297
Target:  5'- gUCACCggcgaaGAGGGCGaguguuucGUGCugUgGGCGCc -3'
miRNA:   3'- -GGUGG------CUCCCGCa-------CAUGugAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88558 0.69 0.783297
Target:  5'- gCGCCGgcGGGGC-UG-ACGCccGGCGCg -3'
miRNA:   3'- gGUGGC--UCCCGcACaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 446 0.69 0.792424
Target:  5'- aCUACCGcGGGCGUccGCucucacuaGCUUcGGCGCc -3'
miRNA:   3'- -GGUGGCuCCCGCAcaUG--------UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 38498 0.69 0.792424
Target:  5'- gUCGCCgGGGGGCGgcgcgGU-CGCc-GGCGCu -3'
miRNA:   3'- -GGUGG-CUCCCGCa----CAuGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 2183 0.69 0.792424
Target:  5'- gCGCCGccuGGGCGgcGUGCg---GGCGCa -3'
miRNA:   3'- gGUGGCu--CCCGCa-CAUGugaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134638 0.69 0.796034
Target:  5'- -gGCUGGGGGCGggccggcagcagGCGCggaGGCGCg -3'
miRNA:   3'- ggUGGCUCCCGCaca---------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 19945 0.68 0.798727
Target:  5'- gCCGCgCGAGGGCucgcccuuccacauGUGgguuUUUGGCGCc -3'
miRNA:   3'- -GGUG-GCUCCCG--------------CACauguGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74337 0.68 0.801406
Target:  5'- gCUGCCGcAGGcGCGc--GCGCUggUGGCGCg -3'
miRNA:   3'- -GGUGGC-UCC-CGCacaUGUGA--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 57660 0.68 0.801406
Target:  5'- gCGCCGucGGGCaggcgGUGgGCACggUGGUGCu -3'
miRNA:   3'- gGUGGCu-CCCG-----CACaUGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77540 0.68 0.801406
Target:  5'- -aGCgCGAGGGCGUggcgcacccucGUGCGCUUuccgcGGcCGCg -3'
miRNA:   3'- ggUG-GCUCCCGCA-----------CAUGUGAA-----CC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 24511 0.68 0.801406
Target:  5'- aCGCCGuGGGCGUcgGgGCUcGcGCGCu -3'
miRNA:   3'- gGUGGCuCCCGCAcaUgUGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 105222 0.68 0.801406
Target:  5'- cCCAcCCGcGGGCGcGcggGCACaggcgGGCGCa -3'
miRNA:   3'- -GGU-GGCuCCCGCaCa--UGUGaa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 524 0.68 0.801406
Target:  5'- uCCGCgGAGGGCaaGUGcccgACGCggggaacgUGGCGg -3'
miRNA:   3'- -GGUGgCUCCCG--CACa---UGUGa-------ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 59606 0.68 0.801406
Target:  5'- gCCGCCGAGaucGCGcgGUGCGCcguGCGCu -3'
miRNA:   3'- -GGUGGCUCc--CGCa-CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 130739 0.68 0.801406
Target:  5'- gCCGCCGucGGCGUcgacGgcgGCGaccgUGGCGCc -3'
miRNA:   3'- -GGUGGCucCCGCA----Ca--UGUga--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 103337 0.68 0.801406
Target:  5'- uCCGCgGAGGGCaaGUGcccgACGCggggaacgUGGCGg -3'
miRNA:   3'- -GGUGgCUCCCG--CACa---UGUGa-------ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 36396 0.68 0.801406
Target:  5'- gCGCCGc-GGCGacgGUGCACUcGcGCGCa -3'
miRNA:   3'- gGUGGCucCCGCa--CAUGUGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 31673 0.68 0.801406
Target:  5'- gCC-CCGAGGaGCuaagggcggccGUGUcuGCGCUguacGGCGCg -3'
miRNA:   3'- -GGuGGCUCC-CG-----------CACA--UGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 37186 0.68 0.807604
Target:  5'- gCGCCGGGagagcccggugcgaGGCGcccgGUGcCGCUUGGCGg -3'
miRNA:   3'- gGUGGCUC--------------CCGCa---CAU-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 74358 0.68 0.810236
Target:  5'- gCCACCaagguGGGC-UGcUGCGCcucgUGGCGCu -3'
miRNA:   3'- -GGUGGcu---CCCGcAC-AUGUGa---ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.