miRNA display CGI


Results 121 - 140 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 93765 0.68 0.810236
Target:  5'- gCgGCUGAGcGaGCGUgacGUGCGCUcucGGCGCg -3'
miRNA:   3'- -GgUGGCUC-C-CGCA---CAUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79997 0.68 0.810236
Target:  5'- gCCGCUGGGGGgcucuaCGcGcGCGCguuUGGCGCg -3'
miRNA:   3'- -GGUGGCUCCC------GCaCaUGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 131700 0.68 0.810236
Target:  5'- gCGCUGuGGGCGcUGccGCACgUGGCGg -3'
miRNA:   3'- gGUGGCuCCCGC-ACa-UGUGaACCGCg -5'
6363 3' -55.9 NC_001847.1 + 74358 0.68 0.810236
Target:  5'- gCCACCaagguGGGC-UGcUGCGCcucgUGGCGCu -3'
miRNA:   3'- -GGUGGcu---CCCGcAC-AUGUGa---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 11018 0.68 0.813724
Target:  5'- gCCAggCGcAGGGCGUGUucguuucgcuguacuAUGCUUGGcCGCa -3'
miRNA:   3'- -GGUg-GC-UCCCGCACA---------------UGUGAACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 72737 0.68 0.813724
Target:  5'- gCGCUGAuGGGCGg--AUACUucaagcugaguccgcUGGCGCu -3'
miRNA:   3'- gGUGGCU-CCCGCacaUGUGA---------------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59867 0.68 0.818906
Target:  5'- gUCGCCGAGGGCcg--GCGCgcggccuccgcgUUGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGcacaUGUG------------AACCGCg -5'
6363 3' -55.9 NC_001847.1 + 54580 0.68 0.818906
Target:  5'- gCC-CCGcGGGC-UGggcgGCGCUggcGGCGCg -3'
miRNA:   3'- -GGuGGCuCCCGcACa---UGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 64678 0.68 0.818906
Target:  5'- uCCACCGGGcgcccgcGCGUGUcGCAgUgcgucaGGCGCg -3'
miRNA:   3'- -GGUGGCUCc------CGCACA-UGUgAa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 119913 0.68 0.818906
Target:  5'- gCCGCCGccGGCGcGUacuucgucuauACGCgccGGCGCg -3'
miRNA:   3'- -GGUGGCucCCGCaCA-----------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 36833 0.68 0.818906
Target:  5'- gCCgACUGGGGGCuGgcggacGUGCGCUcGGCGg -3'
miRNA:   3'- -GG-UGGCUCCCG-Ca-----CAUGUGAaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 109849 0.68 0.818906
Target:  5'- gUCGgCGAGGGCGc---CACgUGGUGCg -3'
miRNA:   3'- -GGUgGCUCCCGCacauGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74710 0.68 0.819764
Target:  5'- gCGCCGAcGcGcGCGUGgacgccgagccuucgGCGCUUGcGCGCg -3'
miRNA:   3'- gGUGGCU-C-C-CGCACa--------------UGUGAAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 59492 0.68 0.826564
Target:  5'- cCCAgCCGgcAGGGgGUGcGCcgaggccgcaccgGCUUGGUGCg -3'
miRNA:   3'- -GGU-GGC--UCCCgCACaUG-------------UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 47849 0.68 0.827407
Target:  5'- gUCGCagGAGGucGCGUGcUGCGCg-GGCGCg -3'
miRNA:   3'- -GGUGg-CUCC--CGCAC-AUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 119223 0.68 0.827407
Target:  5'- gCCACCGcGGGGCGgcggGgcagGCAUggGGcCGUc -3'
miRNA:   3'- -GGUGGC-UCCCGCa---Ca---UGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 85358 0.68 0.827407
Target:  5'- gCAcCCGGGGGCGUGgcaagcguCGCca-GCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCACau------GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 3795 0.68 0.827407
Target:  5'- gCUGCaCGAcGGCGUGccgGCACggGGCGUc -3'
miRNA:   3'- -GGUG-GCUcCCGCACa--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32883 0.68 0.827407
Target:  5'- gCGCUgGAGGGCacgGUGCGCgccGCGCg -3'
miRNA:   3'- gGUGG-CUCCCGca-CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88239 0.68 0.835731
Target:  5'- -aGCCGAGgccGGCGcg-GCGCggGGCGCc -3'
miRNA:   3'- ggUGGCUC---CCGCacaUGUGaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.