Results 81 - 100 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 113021 | 0.66 | 0.887792 |
Target: 5'- gCCGCCGggcccAGGGCGcgcccgcUGU-CGCccccGGCGCg -3' miRNA: 3'- -GGUGGC-----UCCCGC-------ACAuGUGaa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 69333 | 0.67 | 0.881572 |
Target: 5'- -gGCCucGGGCGcugcUGgcgGCGCUggugcUGGCGCg -3' miRNA: 3'- ggUGGcuCCCGC----ACa--UGUGA-----ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 30317 | 0.67 | 0.881572 |
Target: 5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3' miRNA: 3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 87911 | 0.67 | 0.881572 |
Target: 5'- gCACaggggcGGGGCGUGgg-GCUgGGCGCg -3' miRNA: 3'- gGUGgc----UCCCGCACaugUGAaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 53805 | 0.67 | 0.881572 |
Target: 5'- gCCGCaCGugcaaGGCGUGU-CGCg-GGCGCg -3' miRNA: 3'- -GGUG-GCuc---CCGCACAuGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 104447 | 0.67 | 0.881572 |
Target: 5'- gCACCGcGGcGCGcagGUACACgu-GCGCc -3' miRNA: 3'- gGUGGCuCC-CGCa--CAUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 22291 | 0.67 | 0.881572 |
Target: 5'- gCCGCCGAGGcCGac-ACGCUgaUGGgGCu -3' miRNA: 3'- -GGUGGCUCCcGCacaUGUGA--ACCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 133130 | 0.67 | 0.881572 |
Target: 5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3' miRNA: 3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 113485 | 0.67 | 0.881572 |
Target: 5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3' miRNA: 3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 107666 | 0.67 | 0.881572 |
Target: 5'- gCCGCCGAagccGGCGUGcaguCAgUgacGGCGCc -3' miRNA: 3'- -GGUGGCUc---CCGCACau--GUgAa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 102603 | 0.67 | 0.881572 |
Target: 5'- gCGCCGAGGGC---UGCGC---GCGCa -3' miRNA: 3'- gGUGGCUCCCGcacAUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 10672 | 0.67 | 0.881572 |
Target: 5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3' miRNA: 3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 134518 | 0.67 | 0.881572 |
Target: 5'- gCgGCCGc-GGCGcauguggugGUACACggGGCGCg -3' miRNA: 3'- -GgUGGCucCCGCa--------CAUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 116068 | 0.67 | 0.881572 |
Target: 5'- gCACCG-GGGCGcacuuuCGCacGGCGCu -3' miRNA: 3'- gGUGGCuCCCGCacau--GUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 1634 | 0.67 | 0.881572 |
Target: 5'- gCACCGcGGcGCGcagGUACACgu-GCGCc -3' miRNA: 3'- gGUGGCuCC-CGCa--CAUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 34661 | 0.67 | 0.88087 |
Target: 5'- gCGCCGAGGgggcggccgcgcaGCGgcaggagGaGCGC-UGGCGCg -3' miRNA: 3'- gGUGGCUCC-------------CGCa------CaUGUGaACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 98861 | 0.67 | 0.88087 |
Target: 5'- aCCAgcagaucCCGgaAGGGCGcGUGCGCcugGGCGg -3' miRNA: 3'- -GGU-------GGC--UCCCGCaCAUGUGaa-CCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 36189 | 0.67 | 0.877326 |
Target: 5'- aCGCCGuGGcGCGUGggcuCGCUgaagauauaaggcgGGUGCu -3' miRNA: 3'- gGUGGCuCC-CGCACau--GUGAa-------------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 95226 | 0.67 | 0.874452 |
Target: 5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3' miRNA: 3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 79547 | 0.67 | 0.874452 |
Target: 5'- -gGCCGGGGGgGcUGgggcuCGCggggGGCGCc -3' miRNA: 3'- ggUGGCUCCCgC-ACau---GUGaa--CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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