miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 95178 0.67 0.874452
Target:  5'- gCgAUCGGGGGCGcgaucgGggGCGCgaucgggGGCGCg -3'
miRNA:   3'- -GgUGGCUCCCGCa-----Ca-UGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79547 0.67 0.874452
Target:  5'- -gGCCGGGGGgGcUGgggcuCGCggggGGCGCc -3'
miRNA:   3'- ggUGGCUCCCgC-ACau---GUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 43003 0.67 0.874452
Target:  5'- gCCGCCGGGGGgGc--GCGCcgGGcCGCc -3'
miRNA:   3'- -GGUGGCUCCCgCacaUGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 115704 0.67 0.874452
Target:  5'- -aGCCGGcuGcGGCccGUGUGCGCUUgccgccacgGGCGCg -3'
miRNA:   3'- ggUGGCU--C-CCG--CACAUGUGAA---------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 87842 0.67 0.867116
Target:  5'- aCGCCGGcGGGCGUGauggccCGCgggccugUGGuCGCu -3'
miRNA:   3'- gGUGGCU-CCCGCACau----GUGa------ACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 44897 0.67 0.867116
Target:  5'- aCCACgugcugcggaCGGGGGCGUGcGCGacgcGCGCg -3'
miRNA:   3'- -GGUG----------GCUCCCGCACaUGUgaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 105116 0.67 0.867116
Target:  5'- gCCGCCGGGcGGCaUGggccccaGCACgcgGGCGg -3'
miRNA:   3'- -GGUGGCUC-CCGcACa------UGUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 60859 0.67 0.867116
Target:  5'- gCGCC-AGGGCGUccaGCGCggGGCGg -3'
miRNA:   3'- gGUGGcUCCCGCAca-UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 99625 0.67 0.867116
Target:  5'- cUCGCCGAGGa----UGCGCUcGGCGCg -3'
miRNA:   3'- -GGUGGCUCCcgcacAUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 2303 0.67 0.867116
Target:  5'- gCCGCCGGGcGGCaUGggccccaGCACgcgGGCGg -3'
miRNA:   3'- -GGUGGCUC-CCGcACa------UGUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 61296 0.67 0.867116
Target:  5'- gCACCGcGGcGGCGUuuuuaugcgcggGUGCGCggGGCGg -3'
miRNA:   3'- gGUGGC-UC-CCGCA------------CAUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 8474 0.67 0.859569
Target:  5'- -gGCCGGGGGCG---GCGCUcggccgGGgGCg -3'
miRNA:   3'- ggUGGCUCCCGCacaUGUGAa-----CCgCG- -5'
6363 3' -55.9 NC_001847.1 + 119103 0.67 0.859569
Target:  5'- gCCGCCGcGGGGCGgcggGgcagGCAUggGGcCGUc -3'
miRNA:   3'- -GGUGGC-UCCCGCa---Ca---UGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 77249 0.67 0.859569
Target:  5'- cUCGCCcGGGGCGguUGCGCcccgGGCGUc -3'
miRNA:   3'- -GGUGGcUCCCGCacAUGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 54536 0.67 0.859569
Target:  5'- gCCGuCCGGGGGCGcagACGgCgggggcGGCGCg -3'
miRNA:   3'- -GGU-GGCUCCCGCacaUGU-Gaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 59560 0.67 0.859569
Target:  5'- gCGgCGGGGGCG-GUGCcggcggaaGCUcuggcUGGCGUg -3'
miRNA:   3'- gGUgGCUCCCGCaCAUG--------UGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79429 0.67 0.859569
Target:  5'- gCGcCCGAGGGCGgcggGcACACgaagaaGCGCg -3'
miRNA:   3'- gGU-GGCUCCCGCa---CaUGUGaac---CGCG- -5'
6363 3' -55.9 NC_001847.1 + 111287 0.67 0.859569
Target:  5'- -gGCCGGGGGCG---GCGCUcggccgGGgGCg -3'
miRNA:   3'- ggUGGCUCCCGCacaUGUGAa-----CCgCG- -5'
6363 3' -55.9 NC_001847.1 + 36008 0.67 0.859569
Target:  5'- gCgGCCGcGGGCGUGgu-GCUggGGCuGCg -3'
miRNA:   3'- -GgUGGCuCCCGCACaugUGAa-CCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 35173 0.67 0.858803
Target:  5'- aCCGCCGGGGGCacgcggccuucgaGgagGaGCGCgcgcggcugGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCG-------------Ca--CaUGUGaa-------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.