miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 33568 0.66 0.919534
Target:  5'- aCGCgGGGGGCGUcugGCGCggcccgGGCucgGCg -3'
miRNA:   3'- gGUGgCUCCCGCAca-UGUGaa----CCG---CG- -5'
6363 3' -55.9 NC_001847.1 + 33818 0.66 0.901593
Target:  5'- gCGCUgGAGcGGC-UGUGCGCagacgcgGGCGCg -3'
miRNA:   3'- gGUGG-CUC-CCGcACAUGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 34580 0.69 0.761809
Target:  5'- aCGCCGAccugcgcaaggcccGGGCGcugGCGCggcGGCGCg -3'
miRNA:   3'- gGUGGCU--------------CCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 34661 0.67 0.88087
Target:  5'- gCGCCGAGGgggcggccgcgcaGCGgcaggagGaGCGC-UGGCGCg -3'
miRNA:   3'- gGUGGCUCC-------------CGCa------CaUGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35173 0.67 0.858803
Target:  5'- aCCGCCGGGGGCacgcggccuucgaGgagGaGCGCgcgcggcugGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCG-------------Ca--CaUGUGaa-------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35304 0.74 0.504978
Target:  5'- cCCGCCGAGcGGCGc--GCGCUggaagcgGGCGUg -3'
miRNA:   3'- -GGUGGCUC-CCGCacaUGUGAa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35558 0.66 0.895147
Target:  5'- gCGCCaAGcuuGGCGUGcGCGCUUuggagcggcgccGGCGCa -3'
miRNA:   3'- gGUGGcUC---CCGCACaUGUGAA------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35686 0.66 0.907808
Target:  5'- gCC-CCGAGcGGCGcGcUGCGCaacucccacgcUGGCGCa -3'
miRNA:   3'- -GGuGGCUC-CCGCaC-AUGUGa----------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 36008 0.67 0.859569
Target:  5'- gCgGCCGcGGGCGUGgu-GCUggGGCuGCg -3'
miRNA:   3'- -GgUGGCuCCCGCACaugUGAa-CCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 36189 0.67 0.877326
Target:  5'- aCGCCGuGGcGCGUGggcuCGCUgaagauauaaggcgGGUGCu -3'
miRNA:   3'- gGUGGCuCC-CGCACau--GUGAa-------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 36396 0.68 0.801406
Target:  5'- gCGCCGc-GGCGacgGUGCACUcGcGCGCa -3'
miRNA:   3'- gGUGGCucCCGCa--CAUGUGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 36833 0.68 0.818906
Target:  5'- gCCgACUGGGGGCuGgcggacGUGCGCUcGGCGg -3'
miRNA:   3'- -GG-UGGCUCCCG-Ca-----CAUGUGAaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 37059 0.69 0.745531
Target:  5'- -gGCUGGGGGCGgcugGUGCACgcgguacUGGCccGCc -3'
miRNA:   3'- ggUGGCUCCCGCa---CAUGUGa------ACCG--CG- -5'
6363 3' -55.9 NC_001847.1 + 37186 0.68 0.807604
Target:  5'- gCGCCGGGagagcccggugcgaGGCGcccgGUGcCGCUUGGCGg -3'
miRNA:   3'- gGUGGCUC--------------CCGCa---CAU-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 38498 0.69 0.792424
Target:  5'- gUCGCCgGGGGGCGgcgcgGU-CGCc-GGCGCu -3'
miRNA:   3'- -GGUGG-CUCCCGCa----CAuGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 39244 0.78 0.303208
Target:  5'- aCCACCGucaGGCG-GUGCGCUUGGCu- -3'
miRNA:   3'- -GGUGGCuc-CCGCaCAUGUGAACCGcg -5'
6363 3' -55.9 NC_001847.1 + 41712 0.74 0.49536
Target:  5'- aCACCGAgggccaGGGCGUGUACAgCgccGuGCGCu -3'
miRNA:   3'- gGUGGCU------CCCGCACAUGU-Gaa-C-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 41804 0.66 0.895147
Target:  5'- gCCGCgcgcuaCGAGGaCGUG-GCGCgggaUUGGCGCg -3'
miRNA:   3'- -GGUG------GCUCCcGCACaUGUG----AACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 42117 0.66 0.913789
Target:  5'- gCGCCGGGGGCcgcuuccCGCgUUGGCGa -3'
miRNA:   3'- gGUGGCUCCCGcacau--GUG-AACCGCg -5'
6363 3' -55.9 NC_001847.1 + 42307 0.69 0.783297
Target:  5'- gUCACCggcgaaGAGGGCGaguguuucGUGCugUgGGCGCc -3'
miRNA:   3'- -GGUGG------CUCCCGCa-------CAUGugAaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.