miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 43003 0.67 0.874452
Target:  5'- gCCGCCGGGGGgGc--GCGCcgGGcCGCc -3'
miRNA:   3'- -GGUGGCUCCCgCacaUGUGaaCC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 43573 0.7 0.726018
Target:  5'- uUCGCCGcGGGCGac-GCGCgccccagcgUGGCGCu -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUGa--------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 44287 0.66 0.888472
Target:  5'- aCACCGGcGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- gGUGGCUcCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 44439 0.66 0.907808
Target:  5'- gCGCaCGGGGGCGcgGcGCGCggcacGCGCg -3'
miRNA:   3'- gGUG-GCUCCCGCa-CaUGUGaac--CGCG- -5'
6363 3' -55.9 NC_001847.1 + 44897 0.67 0.867116
Target:  5'- aCCACgugcugcggaCGGGGGCGUGcGCGacgcGCGCg -3'
miRNA:   3'- -GGUG----------GCUCCCGCACaUGUgaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 45255 0.66 0.888472
Target:  5'- gCGCCGccGGCGUGaGCGC--GGCGa -3'
miRNA:   3'- gGUGGCucCCGCACaUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 46032 0.69 0.745531
Target:  5'- aCCACCG-GGGCG---GCGCUgccuucUGuGCGCa -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUGA------AC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 46195 0.72 0.574247
Target:  5'- gCGCgGAGaggucGGCGUGUccgucGCGCaUGGCGCa -3'
miRNA:   3'- gGUGgCUC-----CCGCACA-----UGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 46610 0.67 0.847073
Target:  5'- gCCACgcgcacacacguuuaCGAGGGCGa----ACUUGGCGUc -3'
miRNA:   3'- -GGUG---------------GCUCCCGCacaugUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 47619 0.66 0.901593
Target:  5'- cCCAgCGAaaacaaaaGCGUGUGCucgUGGCGCu -3'
miRNA:   3'- -GGUgGCUcc------CGCACAUGugaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 47849 0.68 0.827407
Target:  5'- gUCGCagGAGGucGCGUGcUGCGCg-GGCGCg -3'
miRNA:   3'- -GGUGg-CUCC--CGCAC-AUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48163 0.7 0.716137
Target:  5'- aCCACgUGAuuuagcagcauGGGCGUGaACACgggcucggGGCGCg -3'
miRNA:   3'- -GGUG-GCU-----------CCCGCACaUGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48452 0.75 0.443163
Target:  5'- gCACCGAGGGCGUGaaggugaggcaaaaGCGCgcGGCGa -3'
miRNA:   3'- gGUGGCUCCCGCACa-------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 48692 0.66 0.913789
Target:  5'- gCGCCGucGGCGUccagGCAgCgcGGCGCg -3'
miRNA:   3'- gGUGGCucCCGCAca--UGU-GaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48837 0.72 0.594496
Target:  5'- gCCGCgCGGGGGCGccucGgcCGCgcGGCGCg -3'
miRNA:   3'- -GGUG-GCUCCCGCa---CauGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 49704 0.66 0.901593
Target:  5'- aCUACgGGGGcGCGgcgcccGUGCAagugGGCGCc -3'
miRNA:   3'- -GGUGgCUCC-CGCa-----CAUGUgaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 50036 0.66 0.904107
Target:  5'- aCCAgcCCGcGGGGCGcgGUggcggccgcggguccGCGCgcGGCGCg -3'
miRNA:   3'- -GGU--GGC-UCCCGCa-CA---------------UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 50573 0.66 0.901593
Target:  5'- gUCGCCucugacgacgagGAGGcCGUGUACGa--GGCGCa -3'
miRNA:   3'- -GGUGG------------CUCCcGCACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 51066 0.69 0.774036
Target:  5'- gCCACCGA-GGCGUucGUGCGCg-GGCu- -3'
miRNA:   3'- -GGUGGCUcCCGCA--CAUGUGaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 51669 0.66 0.895147
Target:  5'- cCCGCaacAGGGCGgcGUACGCgc-GCGCc -3'
miRNA:   3'- -GGUGgc-UCCCGCa-CAUGUGaacCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.